Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 354 / 6e-104 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 353 / 2e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 344 / 1e-99 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G18360 332 / 3e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 333 / 4e-97 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 325 / 6e-94 TAO1 target of AVRB operation1 (.1) AT5G38340 322 / 2e-93 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 315 / 4e-90 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 314 / 8e-90 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT4G16890 315 / 9e-90 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015648 [exp] 1226 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10010223 [exp] 1053 / 0 AT5G17680 218 / 6e-58 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10015650 [exp] 1021 / 0 AT4G12010 346 / 3e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10017418 [exp] 895 / 0 AT5G44510 335 / 1e-96 target of AVRB operation1 (.1) Lus10024150 [exp] 821 / 0 AT1G69550 186 / 9e-49 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10018021 [exp] 819 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10007030 [exp] 815 / 0 AT4G12010 316 / 3e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10017419 [exp] 804 / 0 AT4G12010 272 / 9e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10017420 [exp] 747 / 0 AT1G69550 164 / 1e-42 disease resistance protein (TIR-NBS-LRR class) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 492 / 1e-155 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 465 / 4e-144 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 458 / 3e-142 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 452 / 1e-140 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 455 / 2e-140 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 446 / 6e-138 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G069500 [exp] 446 / 1e-135 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 431 / 9e-135 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097800 [exp] 418 / 2e-127 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 407 / 3e-126 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10010221 pacid=23154232 polypeptide=Lus10010221 locus=Lus10010221.g ID=Lus10010221.BGIv1.0 annot-version=v1.0 ATGGCTGCAATTTCTTCTTCTTCTTCTTCTTCTTCATCTCATAGTACTCCGTACGATGTTTTCCTGTGTTTTCGAGGTGACGACACGCGCTATGGTTTCA CGAGCCACCTCATGACTGCTCTACGTGACAGGCAAATCCAAACCTTCATCGACGACAAGCTCGAGAAACAAAAGAGCATCGATGAGTTGAAATCCATCAT CAAAAGATGTGCTCTTTCTGTGGTAGTTTTCTCTGAGAAATTTGCGGATTCGGTCTCGTGCTTGGATGAGGTAGCCATTATAGCTCGAAAGATGAAGGAA TCTGGGTATCGGGTTCTACCGGTTTTATACAAAGTGGATCCATCAAACATGACAAAAGACACTGGAAGCTATGCGGCTACCGTCGATCGTAAACATGAGT CCAGAAGTAGTTATGCAGAGGATAAGAAGAGATGGATGGATGCTTTGAATGTCGTGGCTGATTCTGCTGGCCATAACTCACAGACCTTCAAAAATGAATC TGAATTGATTAAGGCGATTGTGGAAGATGTTCTGAAGAAAATAATTGACATGTCACCGGTTATAAAAAATGATAACTTGGTTGGTATGGGTTCACGCATT TTTGAGGTTGAGCGACTATTGGCGATGGACAAAGTAGATGAGACTCGCATTGTTGGGCTATGGGGAATGGGCGGTGTTGGGAAAACAACTCTAGCAAGAG CATGTTATGAAAGGATAATTTCGTCCAACAAAGGCACCAAACATCTTTTCATCTCAGACTTCAATGAAAGATATGGAACGCATCACAACGTTGAAGAAGT TGTTTGCAAATACTATTCAAAACTGTTGAATGAGGATAACATTGATCGTGAGGATTTGAATTTTACTTATCGACGGGGACGTCTTTCGCGTTTGAGGGTA TTCATTGTCATTGACAATGTTGAGACTTCACAACAATTAGAACACTTGGTTTTAGGAGGAGTCTCCAATCTCAGCACAATCTTTGCAGCGGGGAGTAGGA TCCTCGTAACGACAAGAAATAGAGAAGTGCTTAAAAATGCAACGAGGGAGGTTTACAAAGTTGAGTGTTTGAATGAAGAGAAATCCACCCGATTGTTTAG CCTGCATGCGTTCAGACAAAACTACCCTGAAGATAATTGGAAGCGTAAGTCTCGTCTTGCAACATCATATTGCAAGGGAAATCCCTTGGCACTCAAGATC TTGGGGGGTGCATTGTGCCGTCGAGATATGCATTATTGGCAAAGTTTTTTGAGTGGGTTGAAGCAAATTGGAAAGATGGATATCCACAACGTTCTTAGGA GGAGTTACGATATGCTTGAGGAGATAGAGAAGAAAACATTTCTCGATGTTGCATGTCTGTTCTATGATATGTTAAAATCTCAATTGATCAAGTATATGTC TACCATGTACCCCGCTTCTCTTGTTACGGTGGAGAACCTAATTGATAGATCCCTCTTAACTTGTGTTTCCAACGAGAAGATTAAGGTGCATGATTTACTT AAGGAGATGGCTTGGAATATTGTCAATGGAGAACCAAAACTTGGCAAACGCAGTAGGATAGCAGATCTTGATGATATTCGTAAATTGCTTAGGGCTCGAG ATATTCACAAGTTATTGACAACTTTAGAAGTGAAAAATTGGAGTACGACATCATTTCTCGACTTCTTCAAAGGCATAGTGATGGTGGTCCTACCAAAACC GAAGAGACGAAGAATCGTTGACACGCATTGGAAAGGAAAAATTCCATTGGAGGAACATAGAACTACGGAAGGTATACGTTTGGATCTTCAGACAGCCAAA GAGATGTATTTGGAAGCTGATGCCTTTGAGGGGATGAATTCTCTTACCTTTCTCAAGTTTCATGGCAATGCAGATAAAGTTCATTTGCCTTATGGTGGAC TTAGATCACTTCCTAACCAGTTGAGATGGTTGGAGTGGGAAAGATATCCTTCAAAATCTCTACCAGCAAAGTTTTGTCCTCAACATCTTACCCATCTTAT TATAGTGGATAGTCCGATTCAAAGATGTTGGGAAGGACATGATCAACCCAAACTTGTGATCTTGTTGGTGCTTAATCTCTCCTACTGCAGAAATCTAATC CTGATTCCGAATATATCAAGTTCTTCGAAACTCGAAGAACTCCTTCTCATTAGATGCACAAGCCTCGTTGAGGTACCTTGTCATGTCCAATATTTGACAA AGTTGATAACATTAGACCTTAATGATTGCCGAAACCTCAAGCGTCTTCCGCCTAGACTTGACTCGAAGTTGCTTAAGCATGTTAGGATGAGAAGTTGTCC CAATCTCACATACTTCCCAGAGATTATTTCAAGAGAGTTGGAGAAATTGAATTTATTTGAGACATCCCTCATAGAGCTACCAAGTGCCATTTACAATGTC AAGCAAGATGGAGAACTACTTCTCCATGGTGAAAACATCACCGAATTTCCGGCTGTTACAACAAACTTGAATATTTTTTCATTGACCAGTACTTCAATAA GAGATATTGGTTTTTATGATCGTCACACTTCTTCTGAATCGATTATGCCGAAAGTCAACATACTGGTTCTTTCTGGAAATTTGCAACTCAAGAGCCTGCC GAGTAGCATCAACAATATAAGATCTCTGGAGGGGCTTTATTTATCAGAGACAGGTATTCAATCTCTGCCAGAACTCCCACCAAATCTGAAGATATTGGAA GTAAGTGGTTGCAAGTTTTTACAAGCTCTACCAACCAATACAAGTGAGCTGTTGCATCTGAAGGAACTCCATTTTGATGAATGCCCAGAACTGGCAAATT TACTTGTCCATCCCATCTTGTATGCATCACCAAAGTGTGAATTTGTATGTTCAAGAAGTGAGCTTCCGGAATGGTTAACCTACAAAAGCATGAACTTGAA GGAGGACGACGAGGATTTCAGTGTGAAGGTAGAGTCGCCTCCTCCTAATAGCACTGACCAACCAATGATTGTTAAGGGATTTGCGTTTGGTCTTCTGTTC TCTTCCCGCTCTCGGGTGTTTATGAGATGCGATTACAAAGTCGGCAACACCGTCATCGCATCTTTGGTTTGCTTTGACGGGTATTATACCGGTAGCTCAT CAGAAAAATTATGGTTGCAATACGAGAAGATGGACGTGGGAAGTAAAGAGGATGAAGCGTGGTATGTCAAGTATGCTGGGGTCACTGTTTCGTTAAATTT TAGCATTTTTTATGGGAAAGCTGGGAAACCCAAAATAAAAGGATGTGGGGTTTGTCTGCTCTACTAA
AA sequence Show only first row Show all	>Lus10010221 pacid=23154232 polypeptide=Lus10010221 locus=Lus10010221.g ID=Lus10010221.BGIv1.0 annot-version=v1.0 MAAISSSSSSSSSHSTPYDVFLCFRGDDTRYGFTSHLMTALRDRQIQTFIDDKLEKQKSIDELKSIIKRCALSVVVFSEKFADSVSCLDEVAIIARKMKE SGYRVLPVLYKVDPSNMTKDTGSYAATVDRKHESRSSYAEDKKRWMDALNVVADSAGHNSQTFKNESELIKAIVEDVLKKIIDMSPVIKNDNLVGMGSRI FEVERLLAMDKVDETRIVGLWGMGGVGKTTLARACYERIISSNKGTKHLFISDFNERYGTHHNVEEVVCKYYSKLLNEDNIDREDLNFTYRRGRLSRLRV FIVIDNVETSQQLEHLVLGGVSNLSTIFAAGSRILVTTRNREVLKNATREVYKVECLNEEKSTRLFSLHAFRQNYPEDNWKRKSRLATSYCKGNPLALKI LGGALCRRDMHYWQSFLSGLKQIGKMDIHNVLRRSYDMLEEIEKKTFLDVACLFYDMLKSQLIKYMSTMYPASLVTVENLIDRSLLTCVSNEKIKVHDLL KEMAWNIVNGEPKLGKRSRIADLDDIRKLLRARDIHKLLTTLEVKNWSTTSFLDFFKGIVMVVLPKPKRRRIVDTHWKGKIPLEEHRTTEGIRLDLQTAK EMYLEADAFEGMNSLTFLKFHGNADKVHLPYGGLRSLPNQLRWLEWERYPSKSLPAKFCPQHLTHLIIVDSPIQRCWEGHDQPKLVILLVLNLSYCRNLI LIPNISSSSKLEELLLIRCTSLVEVPCHVQYLTKLITLDLNDCRNLKRLPPRLDSKLLKHVRMRSCPNLTYFPEIISRELEKLNLFETSLIELPSAIYNV KQDGELLLHGENITEFPAVTTNLNIFSLTSTSIRDIGFYDRHTSSESIMPKVNILVLSGNLQLKSLPSSINNIRSLEGLYLSETGIQSLPELPPNLKILE VSGCKFLQALPTNTSELLHLKELHFDECPELANLLVHPILYASPKCEFVCSRSELPEWLTYKSMNLKEDDEDFSVKVESPPPNSTDQPMIVKGFAFGLLF SSRSRVFMRCDYKVGNTVIASLVCFDGYYTGSSSEKLWLQYEKMDVGSKEDEAWYVKYAGVTVSLNFSIFYGKAGKPKIKGCGVCLLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17680			disease resistance protein (TI...		Lus10010221 [exp]	0	1
AT3G24530			AAA-type ATPase family protein...		Lus10005293 [exp]	1.4	0.9462
AT4G11170			Disease resistance protein (TI...		Lus10010222 [exp]	1.4	0.9229
AT5G39670			Calcium-binding EF-hand family...		Lus10026301 [exp]	2.6	0.9032
AT3G44670			Disease resistance protein (TI...		Lus10008525 [exp]	3.7	0.8973
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10036465 [exp]	4.0	0.8966
AT5G54490		PBP1	pinoid-binding protein 1 (.1)		Lus10036734 [exp]	4.5	0.9049
AT3G15200			Tetratricopeptide repeat (TPR)...		Lus10031270 [exp]	4.5	0.9108
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10040753 [exp]	4.9	0.9028
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10027085 [exp]	5.2	0.8831
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10034244 [exp]	6.7	0.9002

Compare expression of checked genes

Lus10010221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.