Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11170 163 / 3e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44480 160 / 4e-44 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 160 / 4e-44 disease resistance protein (TIR-NBS-LRR class) (.1) AT3G44630 158 / 1e-43 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G40910 156 / 9e-43 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 155 / 2e-42 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G51630 155 / 2e-42 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT3G44670 154 / 3e-42 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G49140 154 / 4e-42 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 152 / 1e-41 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017418 [exp] 453 / 8e-153 AT5G44510 335 / 1e-96 target of AVRB operation1 (.1) Lus10017419 [exp] 437 / 1e-152 AT4G12010 272 / 9e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10024149 [exp] 425 / 1e-149 AT4G19510 213 / 8e-61 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) Lus10010221 [exp] 438 / 1e-146 AT5G17680 369 / 4e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007030 [exp] 367 / 2e-123 AT4G12010 316 / 3e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 369 / 3e-119 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015650 [exp] 329 / 5e-107 AT4G12010 346 / 3e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10042777 [exp] 288 / 3e-98 AT3G44630 136 / 2e-36 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) Lus10018021 [exp] 273 / 1e-83 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 184 / 9e-53 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 180 / 3e-51 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 179 / 1e-50 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.004G088500 [exp] 177 / 3e-50 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.019G095932 [exp] 172 / 7e-50 AT4G11170 294 / 5e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G113701 [exp] 174 / 6e-49 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 173 / 1e-48 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.005G030318 [exp] 170 / 1e-47 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.019G097100 [exp] 168 / 4e-47 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G098800 [exp] 163 / 4e-47 AT4G16860 255 / 3e-75 recognition of peronospora parasitica 4, Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10010222 pacid=23154236 polypeptide=Lus10010222 locus=Lus10010222.g ID=Lus10010222.BGIv1.0 annot-version=v1.0 ATGGAAATCAGTCCCTTCCCTGAGTTCATGGCTGCCGCTTCTTATTCTTCTTCTTCTGCATCTCATAGCTCTCTGTACGATTTCTTATGTTTTCGAGGTG ACGACACGCGCCATGGTTTCACCAGCCACCTCATGACTGCTCTGTGTGATAGGCAAATCCAAACATTTATAGACGACAAGCTCGAGAAAACAGAGAGCAT CGGTGAGCTTCAATCCATCCTTGAAAGAACTGCTCTTTCCGTAGTGGTTTTCTCTGAGAGATTTGCGGATTCGGTCTGGTGCTTGGATGAGGTAGCCATC ATAGCCAGACAGATGAAGGAATCCGGGTATTGGGTTCTACCGGTTTTCTACAAAGTGGATCCATCAGACGTGACAGACATTACTGGAAGGTACACAACTA CCATCGATCGTGAACATAAGGGCAGAAGTAGTTATGTAGAGGATAAGAAGAGATGGATGGATGCTTTGAATGTTGTGGCTGATTCTGCTGGCCATACCTC ACAGACCTTCAGAAATGAATCTGAATTGATTAAGGCGATTGTGAAAGATGTTCACAAAAAACTAATTGACATGTCACCAGTTATCAAGAATGATAACTTG GTTGCTATGAGTTCACGTATTTCCGAGGTTGAGCGACTATTGGCTATGGATAAAGTAGACGAGACTCGCATCGTTGGGCTATGGGGAATGGGCGGTGTTG GGAAAACAACTCTAGCAAGAGCATGTTATGAAAGGGTAACTTCGTCCAATAAAGGAATCAAACATCTTTTCATCTCAGACGTCAATGAAAAATATGGAAA GCATCACGACATAGAAGAAGTTGTTTGTAAATACTATTAA
AA sequence Show only first row Show all	>Lus10010222 pacid=23154236 polypeptide=Lus10010222 locus=Lus10010222.g ID=Lus10010222.BGIv1.0 annot-version=v1.0 MEISPFPEFMAAASYSSSSASHSSLYDFLCFRGDDTRHGFTSHLMTALCDRQIQTFIDDKLEKTESIGELQSILERTALSVVVFSERFADSVWCLDEVAI IARQMKESGYWVLPVFYKVDPSDVTDITGRYTTTIDREHKGRSSYVEDKKRWMDALNVVADSAGHTSQTFRNESELIKAIVKDVHKKLIDMSPVIKNDNL VAMSSRISEVERLLAMDKVDETRIVGLWGMGGVGKTTLARACYERVTSSNKGIKHLFISDVNEKYGKHHDIEEVVCKYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11170			Disease resistance protein (TI...		Lus10010222 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10010221 [exp]	1.4	0.9229
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10029021 [exp]	3.2	0.9213
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10034244 [exp]	3.5	0.9036
AT3G44670			Disease resistance protein (TI...		Lus10008525 [exp]	5.1	0.8726
AT5G54490		PBP1	pinoid-binding protein 1 (.1)		Lus10036734 [exp]	5.3	0.9000
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10017861 [exp]	7.0	0.8867
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10022005 [exp]	8.9	0.8966
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10023866 [exp]	9.7	0.8564
AT3G24530			AAA-type ATPase family protein...		Lus10005293 [exp]	10.7	0.8919
AT1G72890			Disease resistance protein (TI...		Lus10009384 [exp]	11.3	0.8376

Compare expression of checked genes

Lus10010222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.