Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 212 / 4e-56 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 190 / 4e-49 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G44510 181 / 3e-46 TAO1 target of AVRB operation1 (.1) AT5G46260 178 / 3e-45 disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27180 174 / 7e-44 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 173 / 1e-43 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 173 / 1e-43 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT4G08450 170 / 9e-43 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46270 161 / 3e-40 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 159 / 1e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024150 [exp] 975 / 0 AT1G69550 186 / 9e-49 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10010221 [exp] 927 / 0 AT5G17680 369 / 4e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10015648 [exp] 902 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10017420 [exp] 755 / 0 AT1G69550 164 / 1e-42 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10001537 [exp] 681 / 0 AT5G44510 175 / 1e-45 target of AVRB operation1 (.1) Lus10017418 [exp] 579 / 0 AT5G44510 335 / 1e-96 target of AVRB operation1 (.1) Lus10015650 [exp] 568 / 0 AT4G12010 346 / 3e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 565 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 513 / 9e-164 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 300 / 1e-85 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 289 / 7e-82 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 255 / 3e-70 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 244 / 3e-66 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 244 / 4e-66 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 243 / 8e-66 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070001 [exp] 242 / 1e-65 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070565 [exp] 242 / 1e-65 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 242 / 1e-65 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 238 / 2e-64 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF07107 [flax] [poplar] WI12 Wound-induced protein WI12 CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10010223 pacid=23154187 polypeptide=Lus10010223 locus=Lus10010223.g ID=Lus10010223.BGIv1.0 annot-version=v1.0 ATGAAGAGGAATCCACCCGGTTGTTTAGTCGACATGCATGCGTTCAGACAAGACTTCTCTCGAGATAATTGGAAGCGTAAGTCTCGTCTTGCAACATCAT ATTGCAAGGGAAATCCCTTGGCACTCAAGATCTTGGGGGGTGCATTGTTCCTTCGATATATGCGTTATTGGGAAAGTTTTTTGAGTGGGTTGAAGCAAAC TGGAGGGAAAGATATCCACAACATTCTTAGGAGGAGTTACGATATGCTTGGGGAGATAGAGCAGAAAATATTTCTCGATGTTGCATGTCTGTTCTATGAC ATATCAAAATCTCAATTGATTGAGTATATGTCTACCATGCATCCTGCTTCTCTTGTCAAGGTGGAGGATCTAATCGATAGATCCCTCTTAGCTTGTATTC CTAACGAGAAGATTGAGGTGCATGATCTACTTAAGGAGATGGCTTGGAATATTGTCAATGGAGAACCAAAGCTTGAAAAACGCAGTAGGATAGCAGATCC TGATGATATTCGTAAATTGCTTAGAGCTCGAGATATTCGTAAATCATTGACAACTTCAGAAGTGAAAAATTGGAGTACTGCATCATTTCTCGGCTTCTTC AAAGCCATAGCAATTGTGGTCTTGCCAAAACTCAAGAGAAGAAGAATCGTTGACATGCATTGGAAAGGAAAAAATCCATTGGAGGAACATAGAACTACTG AAGGTATACGTTTGAATCTTTCGAAAGCCAAAGATATGTATTTGGAAGCTGATGCCTTTGAGGGGATGAATTCTCTTACCTTTCTCAAGTTGCATGGCAA TGCGGATAAAAATAAAGTTCATTTGCCTTATGGTGGACTTAGCTCACTTCCTGACGGGTTGAGATGGTTGGAGTGGGAAAGATATCCTCCAAAATCTCTC CCATCAAAGTTTTGTCCTCAGCACCTGTCCCATCTCATTATACAATATAGTCCAATTGAAAGATGTTGGGAAGGACATGAGCAACCCAAACTTGTGAACT TGCTGATGCTTAATCTCTTCTACTGTACAAATCTAATCGTGATTCCGGATATATCAAGTTCTTCAAAACTCGAAGAGCTCATTCTCTGTAATTGTGAAAG CTTAGTTGAGGTACCTTGTCATGTTCAATATTTGACCAAGTTGATAACATTAGACCTCAGTTATTGCCGAAACCTCAATCGTCTTCCGCCTAGACTTGAC TCGAAGTTGCTTAAGCATGTTAGGATGACGAGTTGTTTCAATGTGACACACTGCCCAGAGATTATTTCAAAAGAGTTGGAGACATTGGATTTATCTGAGA CATCCCTTATAGAACTACCAAGTGTAATTTACAATGTCAAGCAAAATGGAGTTCTACTTCTCCATGGTGAAAACATCACCGAATTTCCTGCAGTTACAAT AAGCTTGGGGACATTTTTATTGATCAGTACTTCAATAAGAGATATTGATTTGTATGATCATCAGACTTCTTCTGACTTTCTACTGCCGAAATTCAAGGAG TTGGGTTTCTGGAGTAATTTGCAACTCGAGAGCCTGCCTAAGAGTATATGGAACATGGCCTCCAGATTACTCGATATTCGTGGAAGCCCGTTGATTGAAA TTTTTCCGGAGATCTCGGAGCCTGTTACAAGCTTAACTCATATTCGTATAACTGAATGTGGAAGCCTCAAAAGCCTGCCATCTAGCATCAGCAATATAAG ATCTCTCGAGAAGCTTGTGTTATCAAAGACAGGTATTAAGTCACTACCGTCTAGTATCCAAGAATTGAGAGAGCTTGTTTCGATTGATCTGAGCTACTGC ACAAGCCTCGAGTCAATACCAACGGGTATCCATAAGCTTTCCAAGTTGCTAAAATTGGTAATGCGTGAGTGTGAGAGTATTCAATCTCTGCCGAAACTCC CACCAAATCTGGAGACATTGAAAGTAAGTGGTTGCAAGTCTTTAAAAGCTCTACCAAGTGAGCTGTTGCATCTGAAGAAACTCCATTTTGAGGAATGCCC ACAACTGGCAAATTTCCTCGTTCATCCCATCTTGTATCCGTCACCGAAGTGTGAACTTGTATGTTCAAGAAATGAGCTTCCGGAATGGTTAACCTACAAA AGCATGAACTTGAAGGAAGAGGACGAGGATTATTGCAATGTGAAGGTAGAGTTGCCTCCTCCTAATAACACTGACCAACCAATGATTGTTAAGGGATTTG CGTTTGGTGTTGTGCTCTCTTCCCTCTCTTGGGTGTTTTTGCATTGCGATTGCAAAGTCGGCAACACCATCATTGCATCTTGGGTTTGCGAGGTCGGGAA TTATTGCCATCAATGTGCTAACACATCAGAAAAATTATGGTTGCAATACGACAAGATGGCTGTGGAAAGTAAAGAAGATGAAGCGTGGTATGTCAAATAT GCTGGAGTCACTGTTTCGTTCGTTTTTTACCTTATTGACGACATGGGAGGACCAAAAGACGTGGAGAAACCAAAAATAAAAGGATGCGAGAGCCTTCACC AGTTTCCTCAGCAAATCCCATTTCCTTTTTATTATATCACCGGCCAATCAGGGCTTCTTCAAGCACTGGCTAACTCCGACGAGCTGGCAGAAAGTTCTCT GCAGGAAAGGAAGAACCGAGAGGTGGTTCTTTCCCTCTATGAGGCCCTGAGCGGCCGCGACGTCGATACAGTCACCAAGATCCTCGCCCACGACCTCGAG TGGTGGTTCCATGGCCCGCCGTCCCACCAGTTTATGATGCGATTGCTCACCGGCGCCGACAACAACAAAAATCAGATCCAATCGTTCGAGTTCGTCCCGA AATCAATCGCGTCCTTCGGATCGATCGTGATAGCGGAAGGCTACGATTCGGGGAGGGAGATTTACTGGGTCCACGCGTGGACCGTCACGGATGGGATAAT CACCCAGGTAAGGGAGTATTTCAACACTTCTCTCACGGTTACGCGCCTATCCAGCTCGAAGTACAACATCAACGGAGGAGGAGGCATCAGGTCCAAGTCG AAGTCATCGACGGCTGAGAATACGCGCGTGCATTGCCCTTCAGTTTGGGAGAGTAGCCTCTCCAAGAAGTCCGTTCCGGGACTCGTTCTCGCCATCTGA
AA sequence Show only first row Show all	>Lus10010223 pacid=23154187 polypeptide=Lus10010223 locus=Lus10010223.g ID=Lus10010223.BGIv1.0 annot-version=v1.0 MKRNPPGCLVDMHAFRQDFSRDNWKRKSRLATSYCKGNPLALKILGGALFLRYMRYWESFLSGLKQTGGKDIHNILRRSYDMLGEIEQKIFLDVACLFYD ISKSQLIEYMSTMHPASLVKVEDLIDRSLLACIPNEKIEVHDLLKEMAWNIVNGEPKLEKRSRIADPDDIRKLLRARDIRKSLTTSEVKNWSTASFLGFF KAIAIVVLPKLKRRRIVDMHWKGKNPLEEHRTTEGIRLNLSKAKDMYLEADAFEGMNSLTFLKLHGNADKNKVHLPYGGLSSLPDGLRWLEWERYPPKSL PSKFCPQHLSHLIIQYSPIERCWEGHEQPKLVNLLMLNLFYCTNLIVIPDISSSSKLEELILCNCESLVEVPCHVQYLTKLITLDLSYCRNLNRLPPRLD SKLLKHVRMTSCFNVTHCPEIISKELETLDLSETSLIELPSVIYNVKQNGVLLLHGENITEFPAVTISLGTFLLISTSIRDIDLYDHQTSSDFLLPKFKE LGFWSNLQLESLPKSIWNMASRLLDIRGSPLIEIFPEISEPVTSLTHIRITECGSLKSLPSSISNIRSLEKLVLSKTGIKSLPSSIQELRELVSIDLSYC TSLESIPTGIHKLSKLLKLVMRECESIQSLPKLPPNLETLKVSGCKSLKALPSELLHLKKLHFEECPQLANFLVHPILYPSPKCELVCSRNELPEWLTYK SMNLKEEDEDYCNVKVELPPPNNTDQPMIVKGFAFGVVLSSLSWVFLHCDCKVGNTIIASWVCEVGNYCHQCANTSEKLWLQYDKMAVESKEDEAWYVKY AGVTVSFVFYLIDDMGGPKDVEKPKIKGCESLHQFPQQIPFPFYYITGQSGLLQALANSDELAESSLQERKNREVVLSLYEALSGRDVDTVTKILAHDLE WWFHGPPSHQFMMRLLTGADNNKNQIQSFEFVPKSIASFGSIVIAEGYDSGREIYWVHAWTVTDGIITQVREYFNTSLTVTRLSSSKYNINGGGGIRSKS KSSTAENTRVHCPSVWESSLSKKSVPGLVLAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17680			disease resistance protein (TI...		Lus10010223 [exp]	0	1
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10039344 [exp]	1.0	0.8924
AT4G14450		ATBET12	unknown protein		Lus10041157 [exp]	1.7	0.8433
AT2G39650			Protein of unknown function (D...		Lus10040293 [exp]	2.4	0.8472
AT3G55740		ATPROT2, ProT2	proline transporter 2 (.1.2)		Lus10028251 [exp]	2.8	0.8334
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10024293 [exp]	3.3	0.8072
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10023267 [exp]	3.7	0.8220
					Lus10033126 [exp]	6.0	0.8232
AT4G32790			Exostosin family protein (.1)		Lus10000608 [exp]	7.9	0.8109
AT5G01740			Nuclear transport factor 2 (NT...		Lus10017421 [exp]	8.1	0.8298
AT1G20920			P-loop containing nucleoside t...		Lus10025525 [exp]	8.9	0.7885

Compare expression of checked genes

Lus10010223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.