Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67300 224 / 5e-72 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) AT4G37260 218 / 2e-69 MYB ATMYB73 myb domain protein 73 (.1) AT2G23290 211 / 6e-67 MYB ATMYB70 myb domain protein 70 (.1) AT3G50060 206 / 9e-65 MYB ATMYB77 myb domain protein 77 (.1) AT3G55730 163 / 2e-47 MYB ATMYB109 myb domain protein 109 (.1) AT2G39880 159 / 4e-46 MYB ATMYB25 myb domain protein 25 (.1) AT3G09230 155 / 2e-44 MYB ATMYB1 myb domain protein 1 (.1) AT1G26780 134 / 1e-37 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) AT1G69560 136 / 2e-37 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT5G17800 133 / 1e-36 MYB ATMYB56 myb domain protein 56 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010055 [exp] 451 / 3e-161 AT4G37260 259 / 2e-85 myb domain protein 73 (.1) Lus10010260 [exp] 220 / 1e-69 AT5G67300 288 / 5e-96 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) Lus10030336 [exp] 212 / 2e-66 AT4G37260 290 / 1e-96 myb domain protein 73 (.1) Lus10014103 [exp] 204 / 1e-64 AT4G37260 213 / 2e-68 myb domain protein 73 (.1) Lus10007503 [exp] 183 / 9e-57 AT4G37260 182 / 2e-56 myb domain protein 73 (.1) Lus10040940 [exp] 182 / 1e-56 AT4G37260 176 / 2e-54 myb domain protein 73 (.1) Lus10021762 [exp] 181 / 2e-55 AT2G23290 179 / 8e-55 myb domain protein 70 (.1) Lus10032764 [exp] 180 / 4e-55 AT4G37260 182 / 5e-56 myb domain protein 73 (.1) Lus10028979 [exp] 178 / 1e-54 AT4G37260 181 / 1e-55 myb domain protein 73 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G122600 [exp] 341 / 1e-117 AT4G37260 258 / 6e-85 myb domain protein 73 (.1) Potri.014G022500 [exp] 317 / 4e-108 AT4G37260 226 / 3e-72 myb domain protein 73 (.1) Potri.007G048900 [exp] 263 / 1e-86 AT4G37260 273 / 2e-90 myb domain protein 73 (.1) Potri.005G142600 [exp] 236 / 5e-76 AT4G37260 246 / 7e-80 myb domain protein 73 (.1) Potri.009G096000 [exp] 195 / 3e-61 AT4G37260 222 / 1e-71 myb domain protein 73 (.1) Potri.014G035100 [exp] 181 / 5e-56 AT4G37260 183 / 1e-56 myb domain protein 73 (.1) Potri.001G300200 [exp] 181 / 5e-56 AT4G37260 203 / 1e-64 myb domain protein 73 (.1) Potri.008G070900 [exp] 178 / 1e-54 AT4G37260 173 / 2e-52 myb domain protein 73 (.1) Potri.002G128900 [exp] 176 / 6e-54 AT4G37260 179 / 2e-55 myb domain protein 73 (.1) Potri.010G195000 [exp] 168 / 6e-49 AT3G55730 295 / 7e-97 myb domain protein 109 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10010238 pacid=23174316 polypeptide=Lus10010238 locus=Lus10010238.g ID=Lus10010238.BGIv1.0 annot-version=v1.0 ATGGCGGCCAGCAAAGAAACAGATCGGATCAAAGGCCCCTGGAGTCCCGAAGAAGACGAGGCGTTACAGCGACTTGTGCAGACTTACGGCCCTCGGAACT GGACTCTCATAAGCAAATCGATCCCTGGTCGTTCCGGAAAGTCTTGCCGGTTGCGGTGGTGCAATCAGCTTTCCCCTGAAGTGGAGCACCGGCCGTTTAC ACCGGAAGAAGACGACATCATCATCAAGGCCCACGCTCGATTCGGCAACAAATGGGCCACTATAGCTCGCCTCCTCAACGGCCGAACTGATAATTCGATT AAGAACCATTGGAACTCTACCCTGAAGAGAAAATGCGACGGCACAACCTCCCTCGCCGAACAGCCTCCTCTCAAGAGATCTGCTAGCCTAGGCGCCGGCT CCAATTTCTCCGGGCTGTACCTTAACCCGAGCAGTCCTTCCGGATCCGATTTGAGCGACTCCAGCTTGCACGGTAATGATTCTTCTTCCCCTGTTTACCG TCCCCTAGCAAGGACGGCGTCCTTAATCCCTCCGACTCTTTCGATGGATGTTTCTTCCTCCATAAGGGATCCGCTCACCTCCCTGAGTCTATCTTTGCCG GGATCAGACCTCCCTGAAACACTGGATGCCGGATCTGCCCTTGGGTTGTGTGCTCTCCCAGCAGCGCCTGTAGCTGCATCACCACCAAATGCTGTTACGG TGGAGCAGCAAGCTCCGATTATGCAAGAGAAAGCTGAAGTTGGGTTGGAGAAACAGATGTTCAATCCGGAGTTTCTAGGGGTGATGCAGGAGATGATAAG GAAGGAAGTGAGGAGTTACATGTCTGGTATTGAGAAGAAGGGGCTGTGTTTCCAGGCAGAATCCATTGGGAACGCTGTGGTTGAGAGAATTGGGATTACC AGGTCCAGGATCGAGTAA
AA sequence Show only first row Show all	>Lus10010238 pacid=23174316 polypeptide=Lus10010238 locus=Lus10010238.g ID=Lus10010238.BGIv1.0 annot-version=v1.0 MAASKETDRIKGPWSPEEDEALQRLVQTYGPRNWTLISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTPEEDDIIIKAHARFGNKWATIARLLNGRTDNSI KNHWNSTLKRKCDGTTSLAEQPPLKRSASLGAGSNFSGLYLNPSSPSGSDLSDSSLHGNDSSSPVYRPLARTASLIPPTLSMDVSSSIRDPLTSLSLSLP GSDLPETLDAGSALGLCALPAAPVAASPPNAVTVEQQAPIMQEKAEVGLEKQMFNPEFLGVMQEMIRKEVRSYMSGIEKKGLCFQAESIGNAVVERIGIT RSRIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010238 [exp]	0	1
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010055 [exp]	1.0	0.9589
AT1G70420			Protein of unknown function (D...		Lus10013011 [exp]	1.4	0.9472
AT5G67300	MYB	ATMYB44, AtMYBr...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10010260 [exp]	2.0	0.9377
AT3G20310	AP2_ERF	ATERF7, ATERF-7	ethylene response factor 7 (.1...		Lus10043182 [exp]	3.0	0.9452
AT4G27280			Calcium-binding EF-hand family...		Lus10033753 [exp]	4.2	0.9347
AT2G23780			RING/U-box superfamily protein...		Lus10016796 [exp]	4.9	0.9204
AT4G27280			Calcium-binding EF-hand family...		Lus10031588 [exp]	5.9	0.9349
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10001902 [exp]	5.9	0.9204
AT1G32250			Calcium-binding EF-hand family...		Lus10030986 [exp]	7.7	0.9092
AT3G57120			Protein kinase superfamily pro...		Lus10027054 [exp]	8.8	0.9080

Compare expression of checked genes

Lus10010238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.