Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37260 254 / 6e-83 MYB ATMYB73 myb domain protein 73 (.1) AT2G23290 245 / 1e-79 MYB ATMYB70 myb domain protein 70 (.1) AT5G67300 240 / 1e-77 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) AT3G50060 210 / 5e-66 MYB ATMYB77 myb domain protein 77 (.1) AT3G55730 159 / 2e-45 MYB ATMYB109 myb domain protein 109 (.1) AT3G09230 155 / 6e-44 MYB ATMYB1 myb domain protein 1 (.1) AT2G39880 149 / 1e-41 MYB ATMYB25 myb domain protein 25 (.1) AT1G69560 139 / 2e-38 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT1G26780 138 / 2e-38 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) AT3G09370 138 / 1e-36 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030336 [exp] 526 / 0 AT4G37260 290 / 1e-96 myb domain protein 73 (.1) Lus10010238 [exp] 231 / 4e-74 AT4G37260 271 / 4e-90 myb domain protein 73 (.1) Lus10010055 [exp] 224 / 2e-71 AT4G37260 259 / 2e-85 myb domain protein 73 (.1) Lus10014103 [exp] 183 / 3e-56 AT4G37260 213 / 2e-68 myb domain protein 73 (.1) Lus10032764 [exp] 179 / 4e-54 AT4G37260 182 / 5e-56 myb domain protein 73 (.1) Lus10021762 [exp] 176 / 3e-53 AT2G23290 179 / 8e-55 myb domain protein 70 (.1) Lus10040940 [exp] 173 / 2e-52 AT4G37260 176 / 2e-54 myb domain protein 73 (.1) Lus10007503 [exp] 171 / 1e-51 AT4G37260 182 / 2e-56 myb domain protein 73 (.1) Lus10028979 [exp] 167 / 7e-50 AT4G37260 181 / 1e-55 myb domain protein 73 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G048900 [exp] 330 / 2e-112 AT4G37260 273 / 2e-90 myb domain protein 73 (.1) Potri.005G142600 [exp] 324 / 7e-110 AT4G37260 246 / 7e-80 myb domain protein 73 (.1) Potri.002G122600 [exp] 253 / 8e-83 AT4G37260 258 / 6e-85 myb domain protein 73 (.1) Potri.014G022500 [exp] 224 / 2e-71 AT4G37260 226 / 3e-72 myb domain protein 73 (.1) Potri.009G096000 [exp] 191 / 3e-59 AT4G37260 222 / 1e-71 myb domain protein 73 (.1) Potri.001G300200 [exp] 181 / 3e-55 AT4G37260 203 / 1e-64 myb domain protein 73 (.1) Potri.014G035100 [exp] 178 / 4e-54 AT4G37260 183 / 1e-56 myb domain protein 73 (.1) Potri.002G128900 [exp] 176 / 1e-53 AT4G37260 179 / 2e-55 myb domain protein 73 (.1) Potri.008G070900 [exp] 171 / 3e-51 AT4G37260 173 / 2e-52 myb domain protein 73 (.1) Potri.008G062700 [exp] 161 / 5e-46 AT3G55730 290 / 7e-95 myb domain protein 109 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10010260 pacid=23169951 polypeptide=Lus10010260 locus=Lus10010260.g ID=Lus10010260.BGIv1.0 annot-version=v1.0 ATGGCATTTACCGGCAAGGAAATTGATCAGATCAAAGGTCCATGGAGCCCCGAGGAAGACAAGAAGCTCCATAACCTCGTAGACAAGCACGGCCCACGCA ACTGGTCATTGATCAGCAAATCAATCCCCGGCCGTTCCGGAAAATCCTGCCGTCTCCGATGGTGTAACCAACTCTCTCCTCAGGTTGAGCACCGCGCCTT TACCGCCGAAGAAGACGACACCATTATCCGAGCCCATGCTAGGTTCGGCAACAAGTGGGCAACTATCGCCCGACTCCTCCACGGCCGCACCGACAACGCC ATCAAGAACCACTGGAACTCTACGCTCAAGCGCAAGTGCTCTTCATCGTCCGAAGGCTACGATGGTAATTTGGGAGATTGTTGCCAGCCTTTGAAGAGGT CGATGAGTGCTGGATCTGGTCTGCCCGTTTCAACGGGGCTTACCATGAACCCTGGGAGTCCATCTGGATCTGACGTCAGCGACTTTTCCAGCGTGCCACT TCCACCTCCCCAGCCATCTGTTTTATTACCGCCTCCACCTCCTCCTGCTAGTACTAGTGCATCGCACGTGTTCAGGCCCGTGCCTAGAACAGGAGGCGTA GCTCCTCCTCCTGAAACCAAGTTGTCGAACAATAGAAACGACGATGACCTGGCTACTTCACTAAGTCTTTCTCTTCCAGGCACGGATTCCTCCTCCGAGG TCTCAACTCCGCGAGCTCCCGAGGCCGCTCATCTTCATCAGAAGCAGCAGCATAAACCTGTTGTTTCCGTTACGTTGCCTCCTTTGCCAGCGATGAACCG TCCCGTGGGGATGGACATTCAGGGTCCATCAGAAATGGGACTGGAGTTCATGTCGGTGATACAAGATATGATAAAGATGGAGGTGAGGAGTTACATGATG GAGCAGAGACAAGGCGTAGCTGGAGGAGGAGGAAACGTTGGTGGTGGGATGTGTTTTCAGGCGGCAGGAGGGAGCGGGTTTAGGAATGTTGCAGCAGTGA AGAGAGTTGGGGTTGGGAAAATTGAGTAG
AA sequence Show only first row Show all	>Lus10010260 pacid=23169951 polypeptide=Lus10010260 locus=Lus10010260.g ID=Lus10010260.BGIv1.0 annot-version=v1.0 MAFTGKEIDQIKGPWSPEEDKKLHNLVDKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTAEEDDTIIRAHARFGNKWATIARLLHGRTDNA IKNHWNSTLKRKCSSSSEGYDGNLGDCCQPLKRSMSAGSGLPVSTGLTMNPGSPSGSDVSDFSSVPLPPPQPSVLLPPPPPPASTSASHVFRPVPRTGGV APPPETKLSNNRNDDDLATSLSLSLPGTDSSSEVSTPRAPEAAHLHQKQQHKPVVSVTLPPLPAMNRPVGMDIQGPSEMGLEFMSVIQDMIKMEVRSYMM EQRQGVAGGGGNVGGGMCFQAAGGSGFRNVAAVKRVGVGKIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67300	MYB	ATMYB44, AtMYBr...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10010260 [exp]	0	1
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010238 [exp]	2.0	0.9377
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10009270 [exp]	4.2	0.9102
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10008893 [exp]	4.9	0.9031
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10009271 [exp]	5.7	0.9081
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10034363 [exp]	5.9	0.8899
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015897 [exp]	7.4	0.8930
AT1G66400		CML23	calmodulin like 23 (.1)		Lus10028516 [exp]	8.5	0.8862
AT5G56150		UBC30	ubiquitin-conjugating enzyme 3...		Lus10016670 [exp]	10.2	0.8790
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10019455 [exp]	11.1	0.8303
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010055 [exp]	11.5	0.8845

Compare expression of checked genes

Lus10010260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.