Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47460 219 / 2e-68 MYB PFG1, ATMYB12 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) AT5G49330 216 / 1e-67 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) AT3G62610 214 / 1e-66 MYB PFG2, ATMYB11 PRODUCTION OF FLAVONOL GLYCOSIDES 2, myb domain protein 11 (.1) AT1G22640 186 / 7e-57 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT3G23250 185 / 3e-56 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT4G09460 184 / 3e-56 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT4G38620 183 / 2e-55 MYB AtMYB4 myb domain protein 4 (.1) AT2G16720 182 / 2e-55 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G21440 184 / 5e-55 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT1G35515 179 / 5e-55 MYB MYB8, HOS10 high response to osmotic stress 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036336 [exp] 554 / 0 AT2G47460 225 / 9e-71 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10016855 [exp] 215 / 2e-67 AT5G49330 242 / 3e-78 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Lus10001458 [exp] 207 / 3e-64 AT2G47460 212 / 5e-66 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10036453 [exp] 202 / 2e-62 AT5G49330 237 / 1e-76 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Lus10002435 [exp] 201 / 8e-62 AT2G47460 206 / 9e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10000470 [exp] 188 / 3e-57 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10033438 [exp] 188 / 3e-57 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10009448 [exp] 186 / 9e-57 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10018418 [exp] 187 / 3e-56 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G198100 [exp] 225 / 3e-70 AT5G49330 225 / 2e-70 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.010G141000 [exp] 221 / 3e-69 AT5G49330 248 / 7e-80 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.014G122700 [exp] 209 / 5e-64 AT5G49330 214 / 4e-66 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.014G100800 [exp] 191 / 6e-59 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.003G144200 [exp] 190 / 2e-58 AT5G49330 205 / 2e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.001G086700 [exp] 189 / 6e-58 AT5G49330 203 / 6e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.003G144300 [exp] 189 / 8e-58 AT1G22640 197 / 1e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.002G173900 [exp] 188 / 2e-57 AT3G13540 207 / 4e-66 myb domain protein 5 (.1) Potri.019G018200 [exp] 185 / 6e-57 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.006G221800 [exp] 187 / 8e-57 AT4G38620 197 / 5e-62 myb domain protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10010273 pacid=23169525 polypeptide=Lus10010273 locus=Lus10010273.g ID=Lus10010273.BGIv1.0 annot-version=v1.0 ATGGGAAGGGCGCCCTGTTGCGAGAAGATCGGGTTAAAGAGAGGCCGATGGACCTCCGAGGAAGACCAAATCCTCACCAAGTACATCCTCGACAATGGCG AAGGCGCTTGGAGGTCACTCCCCAAAAACGCCGGATTGAAGAGGTGCGGGAAGAGCTGCAGGCTGAGGTGGATAAACTACCTGAGAGGCGACCTCAAGAG GGGCAACATTTCTAGTGAAGAGGACGACGTCATCGTCAAGTTGCATTCTTCTCTCGGCAACAGATGGTCTTTAATAGCGAGCTATTTACCCGGAAGAACG GACAACGAAATCAAGAACTATTGGAACTCTCATTTGGGAAGGAAAGTCCACAGTTGCAGTTTTAGACGGCTGATTGGCAATGAACCCGAGTTGAAACTAG TTATGGACACGTCATCGAAGGTCGGAGCAGTGGCCGATGGATCAAAGAGCAAACTGTTGAAATCTTCAAGTACCAAAAAGGGCAAAGCCAAAAAACCGGT GGGCGGTAAGGGGAAAATCCAAGACAAGGCGGTGGTGGAAAACTTAGGAAGCAACGAAGTTCCGCCGTTACAGAAAGTGCCGCCAAGCGACGAGAATATA AGGGACCGGAACGCGGAGGAGAAGCAAGCCATGATGGTGAGTGAAACGGCGCCGTTCAGTTGCATCAGCGCTGATGGTACTATTGATGACGTGGAGTTGG ATTTTCTGGATGGGCTTATGGACAGCGAGATAACAAATGGGCCCTTCGCGTTAAATGAGGAAGGACAGAGTACTGTTGGCAACACTGCCGACACAATAAT GGGCCAGCTCCACGATGTTGATGACGGGGGTAGTGGGCCCATAAAGAGCTGCGACGACGTGGACAAAATTGGAAGCCTGGAGGACAGTTTGGAGTGCTGC TGGCCGACGACGTGGAGCTGGGAGGACGTGGTCGTAAAGGGACATGAACAGTTGGATGATGTTGTGAAATTTAGTAACGGTGATGATGATGGCTTGGATC TTTGCAAGTGGTCGTTGGATTGTGAGGAAATAGTTGGGAGTAGTCAAGAAATGGACAATGACTTGGTGGCTTGGCTTCTTTCTTAA
AA sequence Show only first row Show all	>Lus10010273 pacid=23169525 polypeptide=Lus10010273 locus=Lus10010273.g ID=Lus10010273.BGIv1.0 annot-version=v1.0 MGRAPCCEKIGLKRGRWTSEEDQILTKYILDNGEGAWRSLPKNAGLKRCGKSCRLRWINYLRGDLKRGNISSEEDDVIVKLHSSLGNRWSLIASYLPGRT DNEIKNYWNSHLGRKVHSCSFRRLIGNEPELKLVMDTSSKVGAVADGSKSKLLKSSSTKKGKAKKPVGGKGKIQDKAVVENLGSNEVPPLQKVPPSDENI RDRNAEEKQAMMVSETAPFSCISADGTIDDVELDFLDGLMDSEITNGPFALNEEGQSTVGNTADTIMGQLHDVDDGGSGPIKSCDDVDKIGSLEDSLECC WPTTWSWEDVVVKGHEQLDDVVKFSNGDDDGLDLCKWSLDCEEIVGSSQEMDNDLVAWLLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10010273 [exp]	0	1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10033717 [exp]	3.9	0.8867
					Lus10039807 [exp]	10.6	0.8184
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10010769 [exp]	12.4	0.8582
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10018388 [exp]	16.9	0.8318
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10042882 [exp]	18.0	0.8303
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10024487 [exp]	23.7	0.8359
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	25.4	0.8454
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Lus10017229 [exp]	25.8	0.8306
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Lus10016122 [exp]	26.8	0.8008
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023515 [exp]	26.9	0.8448

Compare expression of checked genes

Lus10010273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.