Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13510 627 / 0 Protein of Unknown Function (DUF239) (.1) AT1G55360 618 / 0 Protein of Unknown Function (DUF239) (.1) AT5G56530 602 / 0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44210 493 / 1e-174 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT5G18460 398 / 3e-137 Protein of Unknown Function (DUF239) (.1) AT1G10750 390 / 2e-133 Protein of Unknown Function (DUF239) (.1) AT2G44220 380 / 2e-130 Protein of Unknown Function (DUF239) (.1) AT1G23340 377 / 2e-129 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT5G50150 376 / 9e-129 Protein of Unknown Function (DUF239) (.1) AT1G70550 372 / 2e-127 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013410 [exp] 779 / 0 AT3G13510 708 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10004766 [exp] 419 / 5e-145 AT5G18460 603 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10003100 [exp] 404 / 6e-139 AT5G18460 593 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10039949 [exp] 395 / 7e-137 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10027683 [exp] 395 / 1e-136 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10042092 [exp] 380 / 3e-130 AT5G50150 540 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013046 [exp] 380 / 3e-129 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10029116 [exp] 379 / 1e-128 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10001248 [exp] 363 / 3e-123 AT5G50150 580 / 0.0 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G003800 [exp] 657 / 0 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 653 / 0 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G233000 [exp] 565 / 0 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 415 / 9e-144 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.013G050100 [exp] 411 / 3e-142 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.008G188000 [exp] 390 / 2e-133 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.010G044300 [exp] 389 / 9e-133 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.012G088300 [exp] 369 / 7e-126 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.015G080300 [exp] 366 / 8e-124 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233600 [exp] 242 / 3e-76 AT5G25950 310 / 3e-102 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10010315 pacid=23169538 polypeptide=Lus10010315 locus=Lus10010315.g ID=Lus10010315.BGIv1.0 annot-version=v1.0 ATGGATACTGGTGTGGGTTTTAGCAGAAGATTGGTGCTTGCCCTTTTCAGCATATTGGGTTTGGTCTCTCTTTCCTCTGCTGCTCGCCTCTACTCAGATT CCAAGCACAGACTTGACGTCCACAAGCATTTGAATCGCTTGAACAAGCCTCCTCTCAACTCCATTCAGAGCCCAGATGGTGATATCATTGACTGTGTTCC CATTTCTAGCCAGCCAGCTTTTGATCATCCCTACCTCAAAGACCACAAGATTCAGATGAGGCCTAGTTTCCACCCAGAGAAGGGCGTATTTGATGAGAAT AAAGTGGCTGCAGAATCTAATGTGAAAATAAATCCAATTAAGCAGCTATGGCATTCCAATGGGAAATGTGCTGAAGGTACCATTCCCATCAGAAGAACAA AGAAAGAAGATGTCCTAAGAGCAAGCTCTGTGAAAAGGTATGGCAAGAAGAAACACAGAACCATCCCCAAGCCAAAGTCTGCAGAACCTGATCTCATCAA TCAAAGTGGCCACCAACATGCTATAGCATATGTGCAAGGAGACAAGTACTTTGGTGCAAAGGGCACTATTAATGTCAGTCCAGATCTCTATGGGGACAAC AACACAAGGCTCTTCACATACTGGACTAGTGATGCATACCAAGCAACCGGGTGCTACAATCTTCTATGCTCAGGCTTTATTCAGATCAACAGTGAGATAG CAATGGGTGCAAGCATCTCTCCTGTTTCTGGCTACCGCAATTCCCAATATGACATCAGTATTCTCATCTGGAAGGATCCAAAGGAAGGGCATTGGTGGAT GCAATTTGGGAATGACTATGTGTTGGGTTACTGGCCTTCATTCCTCTTCTCATACTTGGCAGACAGTGCTTCCATGATTGAGTGGGGAGGTGAAGTAGTG AACACAGAGCCAGATGGTCAGCACACCTCAACCCAAATGGGGAGTGGGCATTTCCCAGAAGAAGGGTTTGGGAAATCAAGTTACTTCAGGAACATTCAAG TAGTGGATGAATCCAACAACCTCAAGGCACCCAAAGGCCTTGGTACCTTCACTGAGCAATCCAACTGCTATGATGTTCAAACAGGCAGCAATGGAGACTG GGGTCATTACTTCTACTATGGTGGCCCTGGTAAAAACCCCAACTGCCAGTGA
AA sequence Show only first row Show all	>Lus10010315 pacid=23169538 polypeptide=Lus10010315 locus=Lus10010315.g ID=Lus10010315.BGIv1.0 annot-version=v1.0 MDTGVGFSRRLVLALFSILGLVSLSSAARLYSDSKHRLDVHKHLNRLNKPPLNSIQSPDGDIIDCVPISSQPAFDHPYLKDHKIQMRPSFHPEKGVFDEN KVAAESNVKINPIKQLWHSNGKCAEGTIPIRRTKKEDVLRASSVKRYGKKKHRTIPKPKSAEPDLINQSGHQHAIAYVQGDKYFGAKGTINVSPDLYGDN NTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSGYRNSQYDISILIWKDPKEGHWWMQFGNDYVLGYWPSFLFSYLADSASMIEWGGEVV NTEPDGQHTSTQMGSGHFPEEGFGKSSYFRNIQVVDESNNLKAPKGLGTFTEQSNCYDVQTGSNGDWGHYFYYGGPGKNPNCQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13510			Protein of Unknown Function (D...		Lus10010315 [exp]	0	1
AT3G13510			Protein of Unknown Function (D...		Lus10013410 [exp]	1.0	0.8669
AT4G33670			NAD(P)-linked oxidoreductase s...		Lus10012456 [exp]	4.9	0.8420
AT3G16175			Thioesterase superfamily prote...		Lus10037583 [exp]	9.7	0.8004
AT1G75060			unknown protein		Lus10017506 [exp]	10.4	0.8169
AT1G47740			PPPDE putative thiol peptidase...		Lus10003951 [exp]	10.4	0.8333
AT2G45250			Integral membrane protein hemo...		Lus10003319 [exp]	11.0	0.8211
AT2G34560			P-loop containing nucleoside t...		Lus10038499 [exp]	11.4	0.8226
AT5G09690		MRS2-7, ATMGT7	ARABIDOPSIS THALIANA MAGNESIUM...		Lus10024860 [exp]	11.7	0.8196
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Lus10005888 [exp]	13.0	0.8143
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10033580 [exp]	13.6	0.7908

Compare expression of checked genes

Lus10010315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.