Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60110 243 / 3e-71 DNA-binding bromodomain-containing protein (.1) AT2G44430 169 / 1e-44 DNA-binding bromodomain-containing protein (.1) AT3G57980 125 / 5e-30 DNA-binding bromodomain-containing protein (.1) AT2G42150 124 / 1e-29 DNA-binding bromodomain-containing protein (.1) AT1G61215 84 / 1e-16 BRD4 bromodomain 4 (.1) AT1G20670 47 / 3e-05 DNA-binding bromodomain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021861 [exp] 436 / 4e-149 AT2G44430 147 / 6e-39 DNA-binding bromodomain-containing protein (.1) Lus10021860 [exp] 263 / 1e-82 AT2G44430 104 / 1e-24 DNA-binding bromodomain-containing protein (.1) Lus10031219 [exp] 117 / 3e-27 AT3G57980 177 / 3e-47 DNA-binding bromodomain-containing protein (.1) Lus10031796 [exp] 117 / 4e-27 AT2G44430 234 / 5e-67 DNA-binding bromodomain-containing protein (.1) Lus10011227 [exp] 77 / 2e-14 AT1G61215 288 / 7e-93 bromodomain 4 (.1) Lus10018457 [exp] 76 / 3e-14 AT1G61215 288 / 6e-93 bromodomain 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G229300 [exp] 206 / 7e-58 AT2G44430 301 / 4e-93 DNA-binding bromodomain-containing protein (.1) Potri.009G023100 [exp] 195 / 1e-53 AT2G44430 280 / 3e-85 DNA-binding bromodomain-containing protein (.1) Potri.003G212500 [exp] 120 / 2e-28 AT3G60110 113 / 6e-26 DNA-binding bromodomain-containing protein (.1) Potri.T042048 [exp] 120 / 3e-28 AT3G60110 113 / 5e-26 DNA-binding bromodomain-containing protein (.1) Potri.001G013600 [exp] 119 / 1e-27 AT3G57980 127 / 2e-30 DNA-binding bromodomain-containing protein (.1) Potri.004G036900 [exp] 85 / 4e-17 AT1G61215 323 / 1e-105 bromodomain 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10010335 pacid=23169494 polypeptide=Lus10010335 locus=Lus10010335.g ID=Lus10010335.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAGAGCCTGGACCACCACCAACTCCGTTGTCAATCATCTTCCGCCGCCGACGAGCAGTCTCAAACATGGGGGACCTGGGAAGAGCTGTTGT TGGCCTTCGCAGTGAAGCGGCACGGCTTCGCCAGCTGGGAATCCGTCGCCGCCGAACTCCAGACCAAGACTTCCCTACCCCAAGTCTTGGCAACTGCCGA ACGTTGTAGGCAGAAGTACCAGGACCTCAACCGCCGGTTCTCCGTCGCCGGCGAGCTTGTCAGCAACGGCTCCGTCGAAAAAGCGGTTCATATACCATGG ATTGAAGAGCTAAGAAAGCTTAGAGTCGCCGAGCTCAAACAAGAGGTCCAACGCTACGATGTTTCCATCCTTTCTCTGCAGCTCAAGGTGAAGAAATTAG AGGATGAGCGGGAGCATGGGTTGCAGGAGAAGGATGGAGGTAAGCGATCCAAGCCAGATCTGCCGGCGGAGAGGCACAGATCGGAAGCGGACGCGAAGGT GAGCGTCTCGATGTCGAGCAGGGAGTCGGATAGGGACAACCGGTCGGTGAACGAGTCGAATTCAACGGCGTCGGGAGCGAAGAAGGCGGCGGATGGGGTG AAGTTAGAAGATCCGAAGACGAGCGGGTCGAATTCGAAGAGGGAGGAGGAGGAGGAGACTGAATCGGTGAGTCAGCGAAGCGGAGAGATAGAGAGTTCGT CGGCGAGTTTGAGGCAGAAGAGGAAGCGGCAAGGGCGTAAAAGGCGGAGAAACGATGTGGATGGAGGCGGAAGCAAGGCGGTGGAAGAGGTTGGGAATGG CGTAGGGGTAGGGGGACAATCTGAGCCGTTAATTGGGCTTATGGATATGATTCGGGCCCATGAACATGGCTCCTTGTTTGAGCGCCGTCTCCAAAGCCAG GAGACGGATGCGTACAGCAGCACAGTGAAGCAGCATTTGGATTTGGAGACCATACAATCTAAGCTACTCCGTGACGAGCTGTCCTATCCTTCGAGCCTCT CGTTCTACCGAGATCTATTGCTTATCTTCACCAATGCCATCGTTTTCTTCCCCAAATCCTCCGCTCAATCCCTTGCTGCTAAACAACTCAGATCAATTGT CGTCCGTGAAATGAAGAAAGAACCTGTCACTCTCAAGTCCGATTCTTCTCAACCCACTGACAGCATCCCCCCACCTCAGCAGCCTAAAGTCGCCGAACCT GAGAAGCTGCCGGCTCCCCTCGTTGTATGTCGCAGGAGGAGCTCAATGTCGGCTAAGCCTTCCTCTTCCACTTCGGTTCAAAAGGTTGAGCAACCTGTGG TTGCAGTAACACCGCAGCCGAAGGAAAGCACCGATCGAGAAGTTGAACAGGGGTCACCGCCGATTGCGAAGCCAGAGAAGAAGGCGGTTACTGGTGCAAG AAGCTCGAGAAGAAGCAACAAGAAGAACGTGACGAAAACCATTCCCAGCAACAAGAGGCAAAATGGAAGCCCTGGGAACAAGGCAACAACAACTGCTGCC GAGAAGCTGGAAACACCGAAAAAGAAAACCGAGGCTTCTGGAGCGGAGAAGAAACGCAGTGCGGCAGCAGACTTCTTGAAGAGGATCAAGAAGAACTCTC CAGGCAATGCACTGTCGAAGAAGAGCAGTACTGCAGGTAATTCTCCAGGCGATGCACTGTCGAAGAAGAAGAGTGGAGGCAGCGGAAATGGTGGAGGAGG GGGAAGCAGCAGAGGAGCTGGAGAGAAGAAGAAGAAGAATGACGAGAAAGGGAAGGGGAGAGGGAAACAGAGATTGTTAAGGAGCAATGACGAGAAGAAA CCATCAGCTGCGAAGGAGGTGAATAAGCCTACTGCTGGCGGGGAAGGGAGCGGGAAGAATGGTTCTTCCACTTCAGGTAATAAGCGAGGGAGGCCTGAAA CCGGAAGCGGGGTAAAGGAGACTGCTGCCCAGAAGAAGCCAAGAAAAAGGGCTAGGAGGTAG
AA sequence Show only first row Show all	>Lus10010335 pacid=23169494 polypeptide=Lus10010335 locus=Lus10010335.g ID=Lus10010335.BGIv1.0 annot-version=v1.0 MAEESLDHHQLRCQSSSAADEQSQTWGTWEELLLAFAVKRHGFASWESVAAELQTKTSLPQVLATAERCRQKYQDLNRRFSVAGELVSNGSVEKAVHIPW IEELRKLRVAELKQEVQRYDVSILSLQLKVKKLEDEREHGLQEKDGGKRSKPDLPAERHRSEADAKVSVSMSSRESDRDNRSVNESNSTASGAKKAADGV KLEDPKTSGSNSKREEEEETESVSQRSGEIESSSASLRQKRKRQGRKRRRNDVDGGGSKAVEEVGNGVGVGGQSEPLIGLMDMIRAHEHGSLFERRLQSQ ETDAYSSTVKQHLDLETIQSKLLRDELSYPSSLSFYRDLLLIFTNAIVFFPKSSAQSLAAKQLRSIVVREMKKEPVTLKSDSSQPTDSIPPPQQPKVAEP EKLPAPLVVCRRRSSMSAKPSSSTSVQKVEQPVVAVTPQPKESTDREVEQGSPPIAKPEKKAVTGARSSRRSNKKNVTKTIPSNKRQNGSPGNKATTTAA EKLETPKKKTEASGAEKKRSAAADFLKRIKKNSPGNALSKKSSTAGNSPGDALSKKKSGGSGNGGGGGSSRGAGEKKKKNDEKGKGRGKQRLLRSNDEKK PSAAKEVNKPTAGGEGSGKNGSSTSGNKRGRPETGSGVKETAAQKKPRKRARR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44430			DNA-binding bromodomain-contai...		Lus10010335 [exp]	0	1
AT2G44430			DNA-binding bromodomain-contai...		Lus10021861 [exp]	1.0	0.9084
					Lus10007413 [exp]	5.7	0.7733
AT5G13340			unknown protein		Lus10035960 [exp]	9.3	0.8202
AT3G13780			SMAD/FHA domain-containing pro...		Lus10037628 [exp]	9.5	0.8187
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10000651 [exp]	13.6	0.8061
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10014843 [exp]	15.0	0.7556
AT4G40045			unknown protein		Lus10043427 [exp]	17.5	0.7041
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Lus10023464 [exp]	19.8	0.7004
AT3G49601			unknown protein		Lus10000736 [exp]	27.3	0.7575
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10031568 [exp]	29.1	0.7524

Compare expression of checked genes

Lus10010335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.