Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13400 801 / 0 SKS13 SKU5 similar 13 (.1) AT1G55570 801 / 0 SKS12 SKU5 similar 12 (.1) AT1G55560 785 / 0 SKS14 SKU5 similar 14 (.1) AT3G13390 781 / 0 SKS11 SKU5 similar 11 (.1) AT5G66920 577 / 0 SKS17 SKU5 similar 17 (.1) AT1G21860 570 / 0 SKS7 SKU5 similar 7 (.1) AT1G21850 567 / 0 SKS8 SKU5 similar 8 (.1) AT1G76160 563 / 0 SKS5 SKU5 similar 5 (.1) AT4G38420 558 / 0 SKS9 SKU5 similar 9 (.1) AT2G23630 557 / 0 SKS16 SKU5 similar 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021863 [exp] 863 / 0 AT1G55570 631 / 0.0 SKU5 similar 12 (.1) Lus10021864 [exp] 857 / 0 AT1G55570 814 / 0.0 SKU5 similar 12 (.1) Lus10010338 [exp] 847 / 0 AT1G55570 815 / 0.0 SKU5 similar 12 (.1) Lus10036492 [exp] 847 / 0 AT3G13400 808 / 0.0 SKU5 similar 13 (.1) Lus10010358 [exp] 840 / 0 AT3G13400 807 / 0.0 SKU5 similar 13 (.1) Lus10016770 [exp] 581 / 0 AT5G66920 837 / 0.0 SKU5 similar 17 (.1) Lus10022465 [exp] 578 / 0 AT5G66920 829 / 0.0 SKU5 similar 17 (.1) Lus10035282 [exp] 560 / 0 AT1G76160 798 / 0.0 SKU5 similar 5 (.1) Lus10030045 [exp] 557 / 0 AT1G76160 796 / 0.0 SKU5 similar 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G224100 [exp] 854 / 0 AT1G55570 855 / 0.0 SKU5 similar 12 (.1) Potri.001G000500 [exp] 851 / 0 AT1G55570 853 / 0.0 SKU5 similar 12 (.1) Potri.001G000600 [exp] 850 / 0 AT1G55570 850 / 0.0 SKU5 similar 12 (.1) Potri.004G180500 [exp] 585 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.005G247700 [exp] 580 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.007G038300 [exp] 575 / 0 AT5G66920 822 / 0.0 SKU5 similar 17 (.1) Potri.014G154500 [exp] 572 / 0 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.002G013700 [exp] 568 / 0 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.002G227600 [exp] 568 / 0 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.007G038200 [exp] 561 / 0 AT4G37160 771 / 0.0 SKU5 similar 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10010337 pacid=23169509 polypeptide=Lus10010337 locus=Lus10010337.g ID=Lus10010337.BGIv1.0 annot-version=v1.0 ATGGAGAGGTTAGGGATTTGCATGGTGATGCTAGGCCTGGCGGCAATCTCAGCCGTACAAGGAGAAGATCCCTACCTGTTCTTCACATGGAACGTCTCGT ACGGGATCCGCTCTCCTCTCGGGGTCCCGCAGCAAGTGATCCTGATCAACGACCAATTCCCGGGCCCCAAAATCAACTCCACCTCCAACAACAACGTCGT GGTCAACGTTTTCAACAACCTGGACGAGCCACTCCTCTTCACGTGGAGTGGGGTCCAGCAGCGCAAGAACTCGTGGCAGGATGGTGTCCTCGGCACCAAC TGCCCGATTTTGCCGGGGACTAACTTCACTTATCACTTCCAGGTCAAGGACCAGATCGGCAGCTTCCTGTATTACCCGTCGACCGCCCTACACAGGGCGG CCGGTGGGTTTGGCGGGCTGGGAATCAACAGCCGCGAATTGATCCCGATCCCGTACGACGTCCCCGAAGATGACTACACGGTTATCATCAACGACTGGTA CCCGAAGAGCCACGCCGCCTTGAAAAACCTGCTCGACAGCGGACGCACTTTGGGGAAGCCCGAAGCCGTCCTCATCAACGGCCAGATCGCTAAAGGCGAC GGATCCGACGAGCCGCTCTTCACCATGAAGGCTGGAAAGACGTACAAGTACAGAATATGTAACGCCGGGTTGAAAACGTCTCTCAACTTTAGGATCCAGG GGCACACCATGAAGCTGGTCGAGATGGAAGGGTCCCACGTGGTTCAAAATTATTACCAATCGTTAGACGTGCATGTCGGTCAATGCATGGCTGTCCTTGT CACCGCTGACCAACCCGGCAGTAAAGATCACGTCATGGTTGCATCCACCCGGTTCACCAAAGGATACGTCCGCGTCGGTAAAGGGATTGTCCGTTACGAA GGAAGCAACGGCGTCGTTTCGAGCGAACCAATCCCTGATGCTCCCGTGGGCTGGGCTTGGTCTTTGAATCAGTTCCGTTCTTTGAGGTGGAATCTAACCT CCAACGCTGCTAGGCCCAACCCACAGGGTTCTTACCATTACGGTCAGATCGAGATCACGAGGACCATCAAGCTGGTTAACTCAGCCGGGTTGGTTAACGG CAAGCTAAGGTACGCCATTAACGGAGTTTCCCACGTGGACGGCGCGACTCCTTTGAAGCTGGCTGAGTATTTCGGAATATCCGACAAGGTGTTTAAATAC GACACAATTCCCGACATGCCGAAGAATGACGATAACGTCAAGATTGTGGTGCAGCCCGATGTGTTGAACTTGACGTTCAGGAACTTTGTGGAGATTGTGT TTGAGAATCACGAGAAGAGCATCCAGTCGTGGCATTTGGATGGGTACTCGTTCTTCACGGTCGGGTCGGAGCCGGGAGTGTGGGGACCGGAGAAGAGGAA GAACTATAACTTGCTTGATGCGGTGAGCAGGACGACGGTGCAGGTGTTCCCGAAATCGTGGACGGCGATAATGCTGACGTTTGACAATGCGGGGATGTGG AACATAAGGTCGGAGATGTGGGAGAGGACGTACTTGGGACAGCAGATGTATGTGAGTGTGTTGTCGCCAGAAAGGTCGTTGAGGGATGAGTATAATATGC CTGAGTCAAGCATGCTGTGTGGTCTTGTGGCTGGCTTGCCCAAGCCTGCTCCTTACTCTGGCACCTAA
AA sequence Show only first row Show all	>Lus10010337 pacid=23169509 polypeptide=Lus10010337 locus=Lus10010337.g ID=Lus10010337.BGIv1.0 annot-version=v1.0 MERLGICMVMLGLAAISAVQGEDPYLFFTWNVSYGIRSPLGVPQQVILINDQFPGPKINSTSNNNVVVNVFNNLDEPLLFTWSGVQQRKNSWQDGVLGTN CPILPGTNFTYHFQVKDQIGSFLYYPSTALHRAAGGFGGLGINSRELIPIPYDVPEDDYTVIINDWYPKSHAALKNLLDSGRTLGKPEAVLINGQIAKGD GSDEPLFTMKAGKTYKYRICNAGLKTSLNFRIQGHTMKLVEMEGSHVVQNYYQSLDVHVGQCMAVLVTADQPGSKDHVMVASTRFTKGYVRVGKGIVRYE GSNGVVSSEPIPDAPVGWAWSLNQFRSLRWNLTSNAARPNPQGSYHYGQIEITRTIKLVNSAGLVNGKLRYAINGVSHVDGATPLKLAEYFGISDKVFKY DTIPDMPKNDDNVKIVVQPDVLNLTFRNFVEIVFENHEKSIQSWHLDGYSFFTVGSEPGVWGPEKRKNYNLLDAVSRTTVQVFPKSWTAIMLTFDNAGMW NIRSEMWERTYLGQQMYVSVLSPERSLRDEYNMPESSMLCGLVAGLPKPAPYSGT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55570		SKS12	SKU5 similar 12 (.1)		Lus10010337 [exp]	0	1
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10021924 [exp]	5.3	0.8145
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Lus10014401 [exp]	8.5	0.8120
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10034440 [exp]	12.3	0.7088
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10017431 [exp]	12.7	0.7954
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036697 [exp]	16.0	0.7922
AT1G75620			glyoxal oxidase-related protei...		Lus10024312 [exp]	18.2	0.7781
					Lus10004679 [exp]	19.0	0.7901
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10031775 [exp]	21.9	0.7573
AT1G24140			Matrixin family protein (.1)		Lus10039464 [exp]	22.4	0.7730
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025410 [exp]	22.9	0.7753

Compare expression of checked genes

Lus10010337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.