Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55570 804 / 0 SKS12 SKU5 similar 12 (.1) AT3G13390 801 / 0 SKS11 SKU5 similar 11 (.1) AT3G13400 794 / 0 SKS13 SKU5 similar 13 (.1) AT1G55560 778 / 0 SKS14 SKU5 similar 14 (.1) AT1G21860 577 / 0 SKS7 SKU5 similar 7 (.1) AT1G76160 571 / 0 SKS5 SKU5 similar 5 (.1) AT1G21850 566 / 0 SKS8 SKU5 similar 8 (.1) AT1G41830 566 / 0 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT4G22010 562 / 0 SKS4 SKU5 similar 4 (.1) AT5G66920 561 / 0 SKS17 SKU5 similar 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021864 [exp] 1054 / 0 AT1G55570 814 / 0.0 SKU5 similar 12 (.1) Lus10036492 [exp] 900 / 0 AT3G13400 808 / 0.0 SKU5 similar 13 (.1) Lus10010358 [exp] 898 / 0 AT3G13400 807 / 0.0 SKU5 similar 13 (.1) Lus10010337 [exp] 845 / 0 AT1G55570 803 / 0.0 SKU5 similar 12 (.1) Lus10021863 [exp] 657 / 0 AT1G55570 631 / 0.0 SKU5 similar 12 (.1) Lus10016770 [exp] 573 / 0 AT5G66920 837 / 0.0 SKU5 similar 17 (.1) Lus10022465 [exp] 572 / 0 AT5G66920 829 / 0.0 SKU5 similar 17 (.1) Lus10035282 [exp] 558 / 0 AT1G76160 798 / 0.0 SKU5 similar 5 (.1) Lus10034560 [exp] 556 / 0 AT1G76160 894 / 0.0 SKU5 similar 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G224100 [exp] 889 / 0 AT1G55570 855 / 0.0 SKU5 similar 12 (.1) Potri.001G000600 [exp] 874 / 0 AT1G55570 850 / 0.0 SKU5 similar 12 (.1) Potri.001G000500 [exp] 870 / 0 AT1G55570 853 / 0.0 SKU5 similar 12 (.1) Potri.004G180500 [exp] 585 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.007G038300 [exp] 575 / 0 AT5G66920 822 / 0.0 SKU5 similar 17 (.1) Potri.005G247700 [exp] 568 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G227600 [exp] 564 / 0 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 562 / 0 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.002G013700 [exp] 561 / 0 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.007G038200 [exp] 559 / 0 AT4G37160 771 / 0.0 SKU5 similar 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10010338 pacid=23169553 polypeptide=Lus10010338 locus=Lus10010338.g ID=Lus10010338.BGIv1.0 annot-version=v1.0 ATGGCGACTTGTCCCACGAGTCTGTTGTTGCTTACTCTAGCCTCGTTGATTTGCACAATCCACGGTGAAGATCCATACCTCTTCTTCACGTGGAAAGTCA CCTACGGTACACGGTCCCCACTGGGCTCGCCGGAGCAGGTGATCCTCATCAACGACGAGTTCCCCGGCCCGGCCCTGAACACAACGACCAACAACAACGT CGTCATCAACGTTTTCAACAACCTCGACGAGCCGTTTCTCATCACGTGGAGCGGGATCCAGCAGAGGAAGAACTCGTGGCAGGATGGCATGCCAGGTACT CAATGCCCCATTCCACCTGGCACCAATTACACTTATCATTTCCAGGTCAAGGACCAGATCGGCAGCTTCTTGTACTACCCTTCCACCGCGATGCACAAGT CAGCAGGCGGCTTCGGTGGGATCCACATCAACAGCCGTCTACTGATTCCTGTCCCGTATGCTGATCCTGAAGCTGACTACACTGTTATCATCAATGATTG GTATAGCAAGACCCATTCCGCTCTCCGAACCATGCTCGATAGCGGCCGAACCTTGGCTAGACCGGAAGGGGTCTTGCTCAATGGCAAGAACGCGAAAGGC GACGGTAAAGACGAGCCGCTCTTTACGATGAAGGCAGGGAAGACTTACAAGTATAGAATTTGTAACGCCGGGTTGAAGACCTCGCTCAATTTCAGGATCC AAGGGCATACGATGAAGCTTGTCGAGATGGAAGGGTCCCACGTCGTGCAGAACACGTACGACTCGCTAGACATCCATGTTGGAGGGTGCATGGCTGTGCT TGTCACGGCAGATCAGGATCCGAAAGACTACTACGTGGTCGCGTCCACTAGGTTCACCAAGACCGTGACTACCGGGAAAGGGATCATCCGTTACGAAGGT GGGAAAGAACCACCTCATACTGAGATCCCTTCTGCTCCTGTGGGATGGGCTTGGTCACTGAATCAGTTCAGATCCTTCAGGTGGAACCTGACTGCCAGCG CTGCCAGGCCTAACCCACAAGGGTCTTACCATTACGGTCAGATCAACATCACCCGTACGATCAAGCTGGCAAACACTGCTGGACGAACCAACGGGAAGTT GAGGTACGCTTTCAACGGTATCTCCCATGTAGACCCACCCACCCCGCTCAAGCTCGCTGAGTACTACCACGTTGCCGATAAGGTTTTCAAGTACGACACC ATGAAGGACAACCCGCCTGCCTCCGACAAAGTCGACATCGTGATGCAGCCCAATGTGATGAACTTCACATTCAGGAACTTCGTCGAGATCATATTCGAGA ACCACGAAAAGACCATCCAGTCCTTCCACTTGGACGGCTACTCCTTCTTTGCTGTCGGGATCGAGCCAGGGATTTGGTCGCCCGCGAAGAGGAAGAACTA CAATCTGCTCGATGCAGTGAGCAGGACGACGATCCAGGTGTACCCGAAATCGTGGGCCGCGATACTGTTGACGTTCGACAATGCAGGGATGTGGAACGTA AGGTCAGAGATGTGGGAGAGGTTCTACTTGGGACAACAGTTCTACGTGAGCACGCTGTCTCCGGGACTCTCTCTGAGAGATGAGTACAGTCTTCCCGACG GCTCGTTGCTCTGTGGAATCGTCAAGGACATGCCTAAGCCCGCTCCATACACTCTCTAG
AA sequence Show only first row Show all	>Lus10010338 pacid=23169553 polypeptide=Lus10010338 locus=Lus10010338.g ID=Lus10010338.BGIv1.0 annot-version=v1.0 MATCPTSLLLLTLASLICTIHGEDPYLFFTWKVTYGTRSPLGSPEQVILINDEFPGPALNTTTNNNVVINVFNNLDEPFLITWSGIQQRKNSWQDGMPGT QCPIPPGTNYTYHFQVKDQIGSFLYYPSTAMHKSAGGFGGIHINSRLLIPVPYADPEADYTVIINDWYSKTHSALRTMLDSGRTLARPEGVLLNGKNAKG DGKDEPLFTMKAGKTYKYRICNAGLKTSLNFRIQGHTMKLVEMEGSHVVQNTYDSLDIHVGGCMAVLVTADQDPKDYYVVASTRFTKTVTTGKGIIRYEG GKEPPHTEIPSAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGQINITRTIKLANTAGRTNGKLRYAFNGISHVDPPTPLKLAEYYHVADKVFKYDT MKDNPPASDKVDIVMQPNVMNFTFRNFVEIIFENHEKTIQSFHLDGYSFFAVGIEPGIWSPAKRKNYNLLDAVSRTTIQVYPKSWAAILLTFDNAGMWNV RSEMWERFYLGQQFYVSTLSPGLSLRDEYSLPDGSLLCGIVKDMPKPAPYTL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55570		SKS12	SKU5 similar 12 (.1)		Lus10010338 [exp]	0	1
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10011185 [exp]	1.4	0.9871
AT2G47710			Adenine nucleotide alpha hydro...		Lus10006701 [exp]	2.8	0.9838
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10012724 [exp]	6.9	0.9836
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10020644 [exp]	9.4	0.9819
AT1G14540			Peroxidase superfamily protein...		Lus10009904 [exp]	10.6	0.9771
AT5G39160			RmlC-like cupins superfamily p...		Lus10032015 [exp]	12.0	0.9818
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10005107 [exp]	13.4	0.9779
AT2G19130			S-locus lectin protein kinase ...		Lus10026391 [exp]	14.7	0.9670
AT3G19615			unknown protein		Lus10031599 [exp]	15.0	0.9724
AT2G47710			Adenine nucleotide alpha hydro...		Lus10006703 [exp]	15.9	0.9533

Compare expression of checked genes

Lus10010338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.