Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04340 1202 / 0 EMB2458 embryo defective 2458, FtsH extracellular protease family (.1) AT5G15250 169 / 3e-43 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G06430 164 / 9e-42 FTSH8 FTSH protease 8 (.1) AT1G50250 163 / 2e-41 FTSH1 FTSH protease 1 (.1) AT5G42270 161 / 8e-41 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT3G47060 155 / 1e-38 FTSH7 FTSH protease 7 (.1) AT5G58870 154 / 3e-38 FTSH9 FTSH protease 9 (.1) AT3G02450 152 / 3e-38 cell division protein ftsH, putative (.1) AT1G07510 145 / 2e-35 FTSH10 FTSH protease 10 (.1) AT2G30950 144 / 3e-35 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036490 [exp] 1843 / 0 AT3G04340 1067 / 0.0 embryo defective 2458, FtsH extracellular protease family (.1) Lus10001054 [exp] 173 / 1e-44 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 173 / 3e-44 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10012277 [exp] 162 / 3e-42 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10016003 [exp] 163 / 3e-41 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10021824 [exp] 158 / 1e-39 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001203 [exp] 152 / 2e-37 AT5G58870 1093 / 0.0 FTSH protease 9 (.1) Lus10005868 [exp] 152 / 2e-37 AT5G58870 1105 / 0.0 FTSH protease 9 (.1) Lus10018210 [exp] 150 / 9e-37 AT5G58870 1049 / 0.0 FTSH protease 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G048700 [exp] 1402 / 0 AT3G04340 1700 / 0.0 embryo defective 2458, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 172 / 3e-44 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.002G215100 [exp] 167 / 9e-43 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 166 / 2e-42 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 164 / 7e-42 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G012000 [exp] 164 / 1e-41 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.009G043100 [exp] 155 / 1e-38 AT5G58870 1039 / 0.0 FTSH protease 9 (.1) Potri.001G249100 [exp] 155 / 2e-38 AT5G58870 997 / 0.0 FTSH protease 9 (.1) Potri.002G220366 [exp] 142 / 2e-37 AT1G06430 405 / 1e-138 FTSH protease 8 (.1) Potri.016G099800 [exp] 145 / 2e-35 AT2G29080 1123 / 0.0 FTSH protease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41 CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10010356 pacid=23169558 polypeptide=Lus10010356 locus=Lus10010356.g ID=Lus10010356.BGIv1.0 annot-version=v1.0 ATGTGGGAACTGAGGGCGGTTTTGAAGGAAGTGAAGGCGAAGAAAGAGGAGTTGCAGGATCAGATAATGGAGGATATGGTTCTGGAAACGAAGAGGCTGA GAGCACAGAAGAGAGAGCTGGTTAGGCGGTTGGATAAGATTGTGGACAGTGGTGAGAAGCTGATGAGCGAGTATGAAAAGTTGAGGGGACGGGGAGAGAG GATGACGGATGATTTGGAGAAGAGAATGGGAGAGGTGGAGGAGGAATATGGTCAGGTTTCGGACATGGTTGAGGATGTGGACGGTGCGAATCGCAAGACA GAGATAGAGGCGATGAGCTATGGAGTTAGGGAGCTTTGCTTCATTGAGAGGGCGTGTGAGGAGCTGGTTGAGACTGTTGCAAAGGGACTCAGGCAGCAGA GGAGAGATAGTAAGGCCAATAGTGTGATTACCAAGCTGTCAAGATCGGAAATCCAGAGAGAACTTGAAACTGCTCAGAGAATGCTCTTGGAACAAATTGC TCTGCCTAATGTTGTGGAAGCTGAAGGTCCTGGACTTCTATATGGCAGTGAATTGTTGGATTTTGCTGATCATGTAAAACAAGGGCTTCAAGAATCAAGG GAGCTACAGCAGTCACTTGAGGCTCGAATAAGAAAAACAATGAGGAAATCTGGCGACGAGAAGAAGTTGGTCGTGAAGACTCCGGAAAGTATTCTGTTGG ACCGCGATAGAGTAGTCTCGAGGACTTGGTATAATGAAGGAAAAAAACGATGGGAAATGGACCCGGTGGCTGTTCCATATGCTGTTTCAATGAAACTAGT GGAGCGTGCTCGAATCAGGCATGATTGGGGTGCCATGTACATTACAATGAAAGGAGATGAAAAAGAATACTACATCAATGCTCAGGAATTTGAAATGCTG CATGAAGAGTTTGGAGGGTTTGATGGGTTATATATGAAAATGCTTGCCAATGACATTCCAACTACTGTTCACTTGATGTGGATCCCTTTGTCTGAGTTGA ATATCCACCAGCAGTTTCTTTTGTGTGTAAGATTAGTTCGCCAATTCCTTCTTGCGTTGTGGAAGAATAGATATGTAATTGATGCAAGAGATTGGCTCTC AGAGGAGATTCAAAATCTGTACGAGGACATTTTGGTGGCAGTTGTTTGTCCTCTGGCAGAGCTTCTCATTCCTTTTGGGGTAAGGATCCGCTTAGGGATG GCATGGCCGGAGGAATTAGATCAAAGTGTTGGCTCGACATGGTACTTGGGATGGCTGTCTACATTACAAAGGAGATACAAGTTCAGGAATCGAAGGAAAC TTCTGTCGTTTGCTTGGTTTTGCTTCAGAATTATTCTGTATGGTTACATTATGCTCTTTGTTTCCCGCCTTGTTAGAAGAAAAGTTCACAGGCTTCTTGG CTTTGGACCTTTAACAAAAGATCCAAATTTCTGGAAGTTCCGGAGAGTGAAAGCTTATCTGAAGGCAAAAACGAAGTTAGTCACAAACAAAAGAAAGACT GGAGTTGACCCGATTAGAACTGCTTTTGAACAGATGAGGAGAGTCAAGAATCCTCCAATCCCGTTAAAGAATTTTTCTAGTATTGAATCTATGAGAGAAG AAATCGATGAAGTGGTTGCGTTTCTGAGAAATCCTTCTGCATTCCAGGAAATGGGTGCCCGTGCTCCTAGGGGAGTTCTTATTGTGGGGGCAAGAGGAAC TGGTAAAACATCGTTGGCACTAGCTATAGCTGCTGAAGCTAGGGTTCCCGTTGTTAAAGTAGAAGCCCAGCAACTAGAGGCTGGACTATGGGTTGGCCAA AGTGCATCAAATGTTCGGGAATTGTTTCAAACAGCTAGGGACTTGGCACCTGTAATCATCTTCGTGGAGGATTTTGATCTTTTTGCTGGTGTCCGTGGCA AGTCCTTACACACTGAGAACCAGGATCACGAAGCTTTCATTAATCAACTCCTTGTGGAACTTGATGGGTTTGAGAAACAAGATGGTGTGGTTTTGATGGC CACAACTCAAGACATCAAGCAAATTGACAAAGCTTTGCAGAGGCCTGGTCGAATGGACAGAGTATTTCGTCTTCAAAGGCCGACTCAAGCAGAAAGAGAG AAGATTTTACTCTCTGCTGCAAAGGAAACCATGGATGAACAACTCATTGATTTTGTTAACTGGAGTAAGGTCTCTGAGAAGACAGCTATTTTACGGCCAA CTGAGCTAAAACAAGTTCCCGTTGCTCTCGAAGGTAGTGCCTTCAGGAACAAGTTGTTGGACGCCGAAGAACTTTTGAGCTATTGCAGTTGGTTTGCGAC TTTCACTGCACTTGTTCCTCAATGGGTAAGAAAAACGAGAGCGGTCAAAAAGATGTCCAGAATGCTTGTGAATCATTTAGGTCTTGAGCTCACTAGGGAA GACATGCGTAACGTTGTTGATCTTATGGAGCCATATGGCCTGGTAGCCAACGGAATGGAGCTCGTGACTCCTTTAGTTGATTGGACGAAGGAGACCAAAT TCCCGCATGCTGTGTGGACTGCTGGTCGTGGTCTTATAGCAACTTTGTTACCAAACTTCGATGTTGTGGATAATTTGTGGCTGGAGCCTTCTTCCTGGCA GGGTATTGGATGCACAAAAATAAACAAAATGCATGGTAGCTTGGAATCCAGAGCGTATCTAGAGAAGAAGCTTGTATTTTGTTTTGGTTCTTATGTTGCG TCACGAATGCTGCTTCCAGTTGGGGAGGAGAATTTTCTTTCTGCCTCGGAACTGAAACAAGCTCAGGAGATAGCTACAAGGATGGTGATCCAGTATGGTT GGGGGCCTGACGACAGTCCAGCAATCTACTACACTACCAGAGCGACCACATCTCTAAGCATGGGCAACAAACACGAGTTTGAGCTGGCAGCTAAAGTCGA AAAGATGTACGATCTAGCATATTTTAAGGCCAAAGAGATGCTGCACCAAAACCGTCGAGTTCTTCAGAAGATTGTTGATGAATTACTTGAATCTGAGATA TTAACTGGCAAGGATATGCAAAGGATAATTGAAGAGAATGGCGGGGTTCGGGAGAAAGAGCCCTTTTCCATTTTAGAGGCTTATCATAGAGAGCCGGCAT CTAGCAGCTTTCTTGAAGTAGGTAATGGACCAGGGCCTGCTGCATTAGCATCAGGATGA
AA sequence Show only first row Show all	>Lus10010356 pacid=23169558 polypeptide=Lus10010356 locus=Lus10010356.g ID=Lus10010356.BGIv1.0 annot-version=v1.0 MWELRAVLKEVKAKKEELQDQIMEDMVLETKRLRAQKRELVRRLDKIVDSGEKLMSEYEKLRGRGERMTDDLEKRMGEVEEEYGQVSDMVEDVDGANRKT EIEAMSYGVRELCFIERACEELVETVAKGLRQQRRDSKANSVITKLSRSEIQRELETAQRMLLEQIALPNVVEAEGPGLLYGSELLDFADHVKQGLQESR ELQQSLEARIRKTMRKSGDEKKLVVKTPESILLDRDRVVSRTWYNEGKKRWEMDPVAVPYAVSMKLVERARIRHDWGAMYITMKGDEKEYYINAQEFEML HEEFGGFDGLYMKMLANDIPTTVHLMWIPLSELNIHQQFLLCVRLVRQFLLALWKNRYVIDARDWLSEEIQNLYEDILVAVVCPLAELLIPFGVRIRLGM AWPEELDQSVGSTWYLGWLSTLQRRYKFRNRRKLLSFAWFCFRIILYGYIMLFVSRLVRRKVHRLLGFGPLTKDPNFWKFRRVKAYLKAKTKLVTNKRKT GVDPIRTAFEQMRRVKNPPIPLKNFSSIESMREEIDEVVAFLRNPSAFQEMGARAPRGVLIVGARGTGKTSLALAIAAEARVPVVKVEAQQLEAGLWVGQ SASNVRELFQTARDLAPVIIFVEDFDLFAGVRGKSLHTENQDHEAFINQLLVELDGFEKQDGVVLMATTQDIKQIDKALQRPGRMDRVFRLQRPTQAERE KILLSAAKETMDEQLIDFVNWSKVSEKTAILRPTELKQVPVALEGSAFRNKLLDAEELLSYCSWFATFTALVPQWVRKTRAVKKMSRMLVNHLGLELTRE DMRNVVDLMEPYGLVANGMELVTPLVDWTKETKFPHAVWTAGRGLIATLLPNFDVVDNLWLEPSSWQGIGCTKINKMHGSLESRAYLEKKLVFCFGSYVA SRMLLPVGEENFLSASELKQAQEIATRMVIQYGWGPDDSPAIYYTTRATTSLSMGNKHEFELAAKVEKMYDLAYFKAKEMLHQNRRVLQKIVDELLESEI LTGKDMQRIIEENGGVREKEPFSILEAYHREPASSSFLEVGNGPGPAALASG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10010356 [exp]	0	1
AT5G08540			unknown protein		Lus10017363 [exp]	1.7	0.9399
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10012114 [exp]	2.0	0.9420
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10033496 [exp]	2.8	0.9358
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10006812 [exp]	2.8	0.9139
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10020342 [exp]	2.8	0.9425
AT3G19740			P-loop containing nucleoside t...		Lus10010204 [exp]	5.2	0.9114
AT4G23940			FtsH extracellular protease fa...		Lus10032404 [exp]	7.1	0.9109
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Lus10034171 [exp]	7.9	0.8980
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10003036 [exp]	8.6	0.8562
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Lus10014663 [exp]	9.3	0.8880

Compare expression of checked genes

Lus10010356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.