Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45580 176 / 7e-54 GARP Homeodomain-like superfamily protein (.1) AT3G24120 147 / 2e-42 GARP Homeodomain-like superfamily protein (.1.2) AT4G13640 145 / 1e-41 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT1G79430 134 / 6e-37 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT3G12730 131 / 8e-37 GARP Homeodomain-like superfamily protein (.1) AT5G18240 127 / 6e-34 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT3G04030 125 / 4e-33 GARP Homeodomain-like superfamily protein (.1.2.3) AT1G69580 117 / 2e-30 GARP Homeodomain-like superfamily protein (.1.2) AT2G01060 106 / 5e-27 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT2G06020 96 / 9e-23 GARP Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012142 [exp] 385 / 1e-135 AT5G45580 215 / 2e-69 Homeodomain-like superfamily protein (.1) Lus10016676 [exp] 150 / 3e-43 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10007132 [exp] 149 / 6e-43 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10001754 [exp] 136 / 8e-37 AT1G79430 292 / 2e-95 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10001844 [exp] 136 / 9e-37 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10037169 [exp] 130 / 4e-36 AT1G69580 252 / 9e-83 Homeodomain-like superfamily protein (.1.2) Lus10036758 [exp] 126 / 2e-34 AT1G69580 258 / 9e-85 Homeodomain-like superfamily protein (.1.2) Lus10039123 [exp] 123 / 8e-34 AT3G24120 173 / 5e-53 Homeodomain-like superfamily protein (.1.2) Lus10020264 [exp] 125 / 7e-33 AT3G04030 441 / 4e-154 Homeodomain-like superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G133400 [exp] 212 / 7e-68 AT5G45580 220 / 2e-71 Homeodomain-like superfamily protein (.1) Potri.003G100100 [exp] 203 / 2e-64 AT5G45580 240 / 6e-79 Homeodomain-like superfamily protein (.1) Potri.001G314800 [exp] 147 / 2e-42 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.017G054800 [exp] 147 / 2e-42 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.013G060200 [exp] 134 / 3e-36 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3) Potri.010G174100 [exp] 130 / 2e-35 AT1G79430 356 / 4e-122 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.008G081800 [exp] 130 / 3e-35 AT1G79430 335 / 6e-114 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.011G023600 [exp] 123 / 1e-33 AT1G79430 180 / 1e-54 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.019G032700 [exp] 126 / 2e-33 AT3G04030 449 / 2e-157 Homeodomain-like superfamily protein (.1.2.3) Potri.016G001200 [exp] 124 / 3e-33 AT4G13640 193 / 5e-60 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10010404 pacid=23154065 polypeptide=Lus10010404 locus=Lus10010404.g ID=Lus10010404.BGIv1.0 annot-version=v1.0 ATGGCGGCATTCGGCGGCGGAGGGATGTACCAGTACGAGAATGGAGTGGTGATGACCAGAGACCCGAAGCCAAGGCTGAGATGGACGGCCGATCTTCACG ACCGGTTCGTCGACGCCGTTACGAAACTCGGTGGCCCTGAGAAGGCGACACCGAAGTCTGTACTGAGATTGATGGGGTTGAAAGGGTTGACCTTGTACCA CTTGAAGAGTCATTTACAGAAGTACAGGCTGGGACAGCAAGGTAATAACAAGCACAGCAACAGTCCTGAACAGAGCAGCAGAGACATCCATAGCAATGGA TCTTCTTCATACATACATTTCAACAACCATTCATCAAATGGGGGTGCAAGTACCAGTTCATCCATATCATCCAGAGACAATGAACCAGGAGGAGACCTCC ATAATGCACTGAAACCGCACATCGAAGTCCAGAAAAGACTGGAAGAACAGCTCGAAGTACAGCAGAAACTGCAGATGAGAATTGAGGCACAAGGGAAGTA CTTACAAGCCATACTAGAGAAAGCTCAGAAGAGCCTTTCGATGGCGATGGAATCTTCAACTGGTGGTGGAGGCTGCAATATCGACGCAACCAGGGCGCAG CTGACGGACTTCAACGTGGCACTGTCGACACTGATTCGGATGAACAATAAGAATGAAGAAGAAGATCAAGAAGGTGGGGTTGATGATGGTCTGAAGCATC TGTACTTGGGCAACAACGGCGGCGGAGGGGAAGAAGTGCAGTTTGATTTGAATGTTAATAATGGCGGTAATGGTGATGTTCTTGGCGGGAATAATAATGG TGATGATGGGTCTGATCAGTTGGAACTTAGGATGGTTTCTTATGGGATTTCTTGA
AA sequence Show only first row Show all	>Lus10010404 pacid=23154065 polypeptide=Lus10010404 locus=Lus10010404.g ID=Lus10010404.BGIv1.0 annot-version=v1.0 MAAFGGGGMYQYENGVVMTRDPKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQGNNKHSNSPEQSSRDIHSNG SSSYIHFNNHSSNGGASTSSSISSRDNEPGGDLHNALKPHIEVQKRLEEQLEVQQKLQMRIEAQGKYLQAILEKAQKSLSMAMESSTGGGGCNIDATRAQ LTDFNVALSTLIRMNNKNEEEDQEGGVDDGLKHLYLGNNGGGGEEVQFDLNVNNGGNGDVLGGNNNGDDGSDQLELRMVSYGIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45580	GARP		Homeodomain-like superfamily p...		Lus10010404 [exp]	0	1
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10001319 [exp]	4.2	0.9522
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10041707 [exp]	5.1	0.9616
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011746 [exp]	7.7	0.9575
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10034548 [exp]	9.2	0.9491
AT4G34800			SAUR-like auxin-responsive pro...		Lus10007563 [exp]	11.2	0.9414
AT3G44220			Late embryogenesis abundant (L...		Lus10043410 [exp]	12.8	0.9522
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10038467 [exp]	13.0	0.9194
AT3G19990			unknown protein		Lus10028680 [exp]	14.0	0.9521
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10032726 [exp]	14.1	0.9475
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015634 [exp]	18.0	0.9283

Compare expression of checked genes

Lus10010404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.