Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10760 209 / 2e-65 GARP Homeodomain-like superfamily protein (.1) AT2G40970 176 / 9e-54 GARP MYBC1 Homeodomain-like superfamily protein (.1) AT5G05090 162 / 2e-48 GARP Homeodomain-like superfamily protein (.1) AT3G46640 140 / 5e-39 GARP PCL1, LUX PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3) AT5G59570 137 / 1e-38 GARP BOA BROTHER OF LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1) AT5G58080 95 / 2e-21 GARP ARR18 response regulator 18 (.1) AT3G16857 94 / 2e-21 GARP ARR1 response regulator 1 (.1.2) AT4G16110 92 / 1e-20 GARP ARR2 response regulator 2 (.1) AT2G01760 88 / 1e-19 GARP ARR14 response regulator 14 (.1) AT2G25180 86 / 2e-18 GARP ARR12 response regulator 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012102 [exp] 273 / 3e-91 AT3G10760 274 / 3e-91 Homeodomain-like superfamily protein (.1) Lus10038996 [exp] 214 / 2e-67 AT3G10760 275 / 5e-91 Homeodomain-like superfamily protein (.1) Lus10027291 [exp] 214 / 3e-67 AT5G05090 266 / 2e-87 Homeodomain-like superfamily protein (.1) Lus10040780 [exp] 127 / 2e-35 AT3G46640 182 / 9e-57 PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3) Lus10005340 [exp] 95 / 2e-21 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10041020 [exp] 94 / 2e-21 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10019058 [exp] 94 / 2e-21 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10016846 [exp] 94 / 4e-21 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10037719 [exp] 94 / 5e-21 AT3G16857 613 / 0.0 response regulator 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G034900 [exp] 213 / 3e-67 AT3G10760 271 / 8e-90 Homeodomain-like superfamily protein (.1) Potri.016G032600 [exp] 204 / 4e-64 AT3G10760 278 / 3e-92 Homeodomain-like superfamily protein (.1) Potri.009G035000 [exp] 140 / 4e-39 AT3G46640 250 / 3e-81 PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3) Potri.001G243600 [exp] 134 / 3e-36 AT3G46640 233 / 8e-74 PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3) Potri.010G001000 [exp] 96 / 9e-22 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G135500 [exp] 95 / 1e-21 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.018G111300 [exp] 94 / 3e-21 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.008G213500 [exp] 94 / 3e-21 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.006G188000 [exp] 92 / 1e-20 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.006G262100 [exp] 92 / 1e-20 AT2G25180 381 / 6e-124 response regulator 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10010442 pacid=23154117 polypeptide=Lus10010442 locus=Lus10010442.g ID=Lus10010442.BGIv1.0 annot-version=v1.0 ATGAGAGAGGACGACTCCAACTGGTTCGCCAAGTGGGAAGAAGAACTTCCGCCGCCGGACGAGCTCATGCCGATCTCCCAGACCCTAATTACTCCCGATC TAGCCTTAGCCTTCGACATCCGGAACCATCCGATGAACCAGAATCACCAGCCTCCTCCTCTGCCGGTTCCGCCGCCGAGCAGCAGCGGGAATCCGTCTTC AATTGCTTCAATTGCCGCCACCTCGTCCGAATTCGCCGCCGAGGAGTCGGCGGAGTTTGGATCCAACGGCAACGGAGGAGGAGCCGACGACGACCAGGCG AGGACGCTCAAGCGGCCGCGGCTAGTGTGGACGCCGCAGCTGCACAAGAGGTTTGTCGACGCGGTGGCGCACCTGGGGATCAAGAACGCCGTCCCGAAGA CGATCATGCAGCTGATGAGCGTTGACGGGTTGACTCGGGAGAACGTCGCCAGTCACTTGCAGAAGTATAGGCTGTACCTCAAGCGGATGCAAGGGCTTCC CTCTGGCGGTGGAGGAGGAAACTGCCACGGCGGAGGGGGTGGCGATTCCGCCACCGATCGGTTGTTTGCGAGTTCTCCGGTTCCGGCGCATTTCCTGCAT CCAGGTGGGAGGCCTACTTCCGATCATTTCCTGCCGTTTGTTCCCGTCACTGCCCTTCAGCAGCATCACCAGCAGATGGCGGCGGCGGCGGCGGCCGCCG GAGTAGCTCATCCGCAATACCATAGGCAGATTGGGCAATTCGATCATCCATTTCTAGCTAGGCAAGCTCCACCGTCTCAGCAGCAGCAGCAAGCTGTGCC GAGGATGGGTCCTCCGGTGCAGAATGTGGAGGATTTGGAGTCGTCGGCGGGGAATGGGAACGATGGCGGGAGGAAAGCTCTAACTCTGTTTCCTACTGCA GAAGATTGA
AA sequence Show only first row Show all	>Lus10010442 pacid=23154117 polypeptide=Lus10010442 locus=Lus10010442.g ID=Lus10010442.BGIv1.0 annot-version=v1.0 MREDDSNWFAKWEEELPPPDELMPISQTLITPDLALAFDIRNHPMNQNHQPPPLPVPPPSSSGNPSSIASIAATSSEFAAEESAEFGSNGNGGGADDDQA RTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLPSGGGGGNCHGGGGGDSATDRLFASSPVPAHFLH PGGRPTSDHFLPFVPVTALQQHHQQMAAAAAAAGVAHPQYHRQIGQFDHPFLARQAPPSQQQQQAVPRMGPPVQNVEDLESSAGNGNDGGRKALTLFPTA ED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10010442 [exp]	0	1
AT3G15358			unknown protein		Lus10015439 [exp]	6.0	0.8522
AT4G28240			Wound-responsive family protei...		Lus10031617 [exp]	11.6	0.8580
AT1G13570			F-box/RNI-like superfamily pro...		Lus10030920 [exp]	12.6	0.8667
AT2G17880			Chaperone DnaJ-domain superfam...		Lus10028453 [exp]	12.9	0.8646
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Lus10009909 [exp]	19.0	0.8624
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10041906 [exp]	29.0	0.8356
AT3G29270			RING/U-box superfamily protein...		Lus10005220 [exp]	30.5	0.8608
AT5G27830			unknown protein		Lus10029881 [exp]	36.6	0.8517
AT1G33230			TMPIT-like protein (.1)		Lus10033261 [exp]	37.1	0.8226
AT4G39040			RNA-binding CRS1 / YhbY (CRM) ...		Lus10028787 [exp]	37.9	0.8190

Compare expression of checked genes

Lus10010442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.