Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41920 316 / 2e-104 GRAS GRAS family transcription factor (.1) AT3G54220 282 / 3e-88 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT1G63100 129 / 3e-32 GRAS GRAS family transcription factor (.1) AT1G66350 119 / 5e-29 GRAS RGL1 RGA-like 1 (.1) AT3G03450 119 / 7e-29 GRAS RGL2 RGA-like 2 (.1) AT1G55580 115 / 5e-28 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT5G17490 114 / 2e-27 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G01570 114 / 6e-27 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G50420 110 / 4e-26 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT4G37650 105 / 2e-24 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016496 [exp] 249 / 2e-75 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10040734 [exp] 244 / 3e-73 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10003540 [exp] 217 / 2e-64 AT3G54220 423 / 1e-141 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10033912 [exp] 214 / 2e-63 AT3G54220 414 / 6e-138 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10012554 [exp] 157 / 2e-41 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10041540 [exp] 157 / 2e-41 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10006322 [exp] 145 / 5e-38 AT1G63100 588 / 0.0 GRAS family transcription factor (.1) Lus10029592 [exp] 145 / 2e-37 AT1G63100 669 / 0.0 GRAS family transcription factor (.1) Lus10036932 [exp] 126 / 2e-31 AT1G66350 258 / 1e-79 RGA-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G021400 [exp] 409 / 3e-140 AT5G41920 509 / 2e-180 GRAS family transcription factor (.1) Potri.016G018900 [exp] 404 / 2e-138 AT5G41920 506 / 5e-179 GRAS family transcription factor (.1) Potri.016G143833 [exp] 276 / 2e-84 AT3G54220 679 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.006G114200 [exp] 273 / 3e-83 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.002G036100 [exp] 222 / 8e-67 AT3G54220 441 / 9e-149 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.005G226800 [exp] 221 / 3e-66 AT3G54220 424 / 3e-142 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.001G326000 [exp] 155 / 6e-41 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.003G122400 [exp] 147 / 3e-38 AT1G63100 696 / 0.0 GRAS family transcription factor (.1) Potri.001G109400 [exp] 146 / 6e-38 AT1G63100 711 / 0.0 GRAS family transcription factor (.1) Potri.015G008300 [exp] 131 / 1e-33 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10010462 pacid=23154094 polypeptide=Lus10010462 locus=Lus10010462.g ID=Lus10010462.BGIv1.0 annot-version=v1.0 ATGGACAACCTCGACGATGCTACGGATCTGTTGCCGGAGATCTCGGAGCTGTCATCCCCGTTCGGTTCTTCTCCGGAAAGGGTGGGCGCGTACTTCGCAC ATGCCCTCCAGGCGCGTGTCGTCAGCTCGTGCTTGGGCTCGTACTCGCCGCTGACGACGAAGAACGTGACGCTGACACAATCGCAGAAGTTCTTCACAGC GTTCCAGTCCTACAACTCCATCTCCCCCTTGATCAAATTCTCCCACTTCACGGCGAACCAGGCGATTTTCCAGGCCTTGGACGGCGAGGATCGGGTCCAC GTCATCGACCTCGACATCATGCAGGGACTCCAATGGCCAGGATTGTTCCACATCCTCGCCTCACGGACGAAGAAGATCCGGTCAATGAGGATAACTGGGT TCGGATCCTCCACGGAGCTGCTCGAATCCACCGGCCGCCGACTCGCCGACTTCGCCAGCTCGTTGGGGCTACCGTTCGAATTCCATCCTGTGGAAGGCAA AATCGGAAGCGTCACCGATCTAAGCCAGCTCGGTATCCGACCTAGAGAAGCTGTAATCGTCCACTGGATGCATCACTGCTTATACGACATCACCGGAAGC GATTTATCCACTCTGAGCCTTTTATCGCTCGTCCGGCCGAAGCTCGTGACCATCGTCGAACAGGATCTGAGGCGGACGAAGAAGATCCGGTCAATGAGGA TAACCGGGTTCGGATCCTCAACGGAGCTGCTCGAATCCACCGGCCGCCGACTCGCCGACTTCGCCAGCTCGTTGGGGCTACCGTTCGAATTCCATCCTGT GGAAGGCAAAATCGGAAGCGTCACCGATCTAAGCCAGCTCGGTATCCGACCTAGAGAAGCTGTAATCGTCCACTGGATGCATCACTGCTTATACGACATC ACCGGAAGCGATTTATCCACTCTGAGCCTTTTATCGCTCGTCCGGCCGAAGCTCGTGACCATCGTCGAACAGGATCTGAGCCACGGCGGGAATTTCTTAG GGAGGTTCGTCGAGGCGCTTCACTACTACAGCGCGTTATTCGACGCGCTCGGCGATGGACTGGAGGCGGAGAACTTGGAGCGGCACACGGTGGAGCAGCA GCTGTTCGGGTGCGAGATCCGGAACATCGTCGCCGTCGGCGGCCCGAAGAGGACCGGAGAAGTGAAAGTGGAGCGGTGGGGGGATGAGCTGAGGCGGGTG GGGTTCCGGCCCGTTTCGCTGGGCGGAAACCCGGCCGCCCAAGCCGGGTTGTTGCTGGGTATGTTTCCGTGGAAAGGTTACACTCTAGTGGAGGAGGAAA ACGGGTCGTTGAAATTGGGTTGGAAGGATTTGTCGCTGTTGACTGCGTCGGCTTGGGCGCCGTCCGATTGA
AA sequence Show only first row Show all	>Lus10010462 pacid=23154094 polypeptide=Lus10010462 locus=Lus10010462.g ID=Lus10010462.BGIv1.0 annot-version=v1.0 MDNLDDATDLLPEISELSSPFGSSPERVGAYFAHALQARVVSSCLGSYSPLTTKNVTLTQSQKFFTAFQSYNSISPLIKFSHFTANQAIFQALDGEDRVH VIDLDIMQGLQWPGLFHILASRTKKIRSMRITGFGSSTELLESTGRRLADFASSLGLPFEFHPVEGKIGSVTDLSQLGIRPREAVIVHWMHHCLYDITGS DLSTLSLLSLVRPKLVTIVEQDLRRTKKIRSMRITGFGSSTELLESTGRRLADFASSLGLPFEFHPVEGKIGSVTDLSQLGIRPREAVIVHWMHHCLYDI TGSDLSTLSLLSLVRPKLVTIVEQDLSHGGNFLGRFVEALHYYSALFDALGDGLEAENLERHTVEQQLFGCEIRNIVAVGGPKRTGEVKVERWGDELRRV GFRPVSLGGNPAAQAGLLLGMFPWKGYTLVEEENGSLKLGWKDLSLLTASAWAPSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41920	GRAS		GRAS family transcription fact...		Lus10010462 [exp]	0	1
AT2G30620			winged-helix DNA-binding trans...		Lus10005535 [exp]	1.4	0.8950
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10025329 [exp]	6.5	0.8710
AT3G26990			ENTH/VHS family protein (.1)		Lus10032013 [exp]	7.2	0.8298
AT2G11890			adenylate cyclases (.1.2)		Lus10024472 [exp]	10.2	0.8255
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10000315 [exp]	12.2	0.8638
AT3G26990			ENTH/VHS family protein (.1)		Lus10035182 [exp]	14.3	0.8420
AT3G58690			Protein kinase superfamily pro...		Lus10033606 [exp]	15.9	0.8285
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10017858 [exp]	15.9	0.8253
AT1G56350			Peptide chain release factor 2...		Lus10031411 [exp]	19.4	0.7955
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10018659 [exp]	19.4	0.8504

Compare expression of checked genes

Lus10010462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.