Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32300 83 / 2e-19 UCC1 uclacyanin 1 (.1) AT3G27200 76 / 2e-17 Cupredoxin superfamily protein (.1) AT5G07475 72 / 1e-15 Cupredoxin superfamily protein (.1) AT2G26720 72 / 1e-15 Cupredoxin superfamily protein (.1) AT3G17675 66 / 2e-14 Cupredoxin superfamily protein (.1) AT3G53330 69 / 4e-14 plastocyanin-like domain-containing protein (.1) AT1G45063 66 / 6e-13 copper ion binding;electron carriers (.1.2) AT4G27520 64 / 3e-12 AtENODL2 early nodulin-like protein 2 (.1) AT2G25060 61 / 1e-11 AtENODL14 early nodulin-like protein 14 (.1) AT4G30590 60 / 2e-11 AtENODL12 early nodulin-like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003799 [exp] 155 / 7e-49 AT2G32300 49 / 1e-07 uclacyanin 1 (.1) Lus10022350 [exp] 78 / 4e-18 AT3G27200 169 / 7e-54 Cupredoxin superfamily protein (.1) Lus10041570 [exp] 76 / 2e-17 AT3G27200 167 / 2e-53 Cupredoxin superfamily protein (.1) Lus10027143 [exp] 73 / 1e-15 AT2G32300 137 / 9e-40 uclacyanin 1 (.1) Lus10012085 [exp] 69 / 1e-14 AT5G07475 142 / 4e-43 Cupredoxin superfamily protein (.1) Lus10027043 [exp] 65 / 4e-13 AT1G72230 112 / 4e-31 Cupredoxin superfamily protein (.1) Lus10025580 [exp] 65 / 4e-13 AT1G72230 112 / 4e-31 Cupredoxin superfamily protein (.1) Lus10019955 [exp] 63 / 2e-12 AT4G30590 120 / 1e-34 early nodulin-like protein 12 (.1) Lus10002618 [exp] 59 / 1e-11 AT3G27200 89 / 2e-23 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G009000 [exp] 157 / 4e-49 AT2G32300 77 / 3e-17 uclacyanin 1 (.1) Potri.016G015200 [exp] 147 / 4e-45 AT3G27200 73 / 1e-16 Cupredoxin superfamily protein (.1) Potri.001G080700 [exp] 79 / 1e-18 AT5G07475 164 / 1e-51 Cupredoxin superfamily protein (.1) Potri.003G150300 [exp] 78 / 4e-18 AT5G07475 178 / 2e-57 Cupredoxin superfamily protein (.1) Potri.001G332200 [exp] 76 / 3e-17 AT3G27200 171 / 5e-55 Cupredoxin superfamily protein (.1) Potri.007G120200 [exp] 67 / 9e-14 AT2G32300 118 / 3e-32 uclacyanin 1 (.1) Potri.014G049600 [exp] 62 / 4e-12 AT3G60270 111 / 8e-31 Cupredoxin superfamily protein (.1) Potri.002G101300 [exp] 61 / 7e-12 AT1G72230 131 / 6e-39 Cupredoxin superfamily protein (.1) Potri.013G030000 [exp] 61 / 1e-11 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.013G030450 [exp] 59 / 3e-11 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10010484 pacid=23154101 polypeptide=Lus10010484 locus=Lus10010484.g ID=Lus10010484.BGIv1.0 annot-version=v1.0 ATGGCCGGCGTTGGAACGATGAATCACGCGGCGGCGCTGGCGGTGGTGGTGGCTGTTCTTGCGGCGGCGGCCAGCTTGTTGGATGGCGCCGAAGGGCAGA TGCACCATGTTGTTGGAGGGGATCGTGGCTGGGAACTCGCCACCGACTTGGCTTCCTGGCTCGACGGTCGGACTTTCCACGTCGGAGATCGGATCTGGTT CGCCTACTCTGCTGCAGCGGGAGGGGTCTATGAGCTCGGGTCGAAAGAGGAGTACTACACGTGCGATTCGGCCAACCCAATAAAGATGTATACAGACGGT CTAAACAGCATCCACCTCACCGGTGAAGGGATTCGCTACTTCGTCAGCAGTAACACTTCCAGCTGCAAGGATGGTCTCAAGTTACATGTCGAGGCTCTTC CTCGAGAGATTTCGAAGGGAAATGACGGAATTGCCAGGCCGGTTTCCATATCGAGCTCGGACTCGGTTCTTGCTGCTGAGCCGACAGCTCCCTCAGGTGC GGCCCATGTTGGCGGAAGCCTGCTTTTGGGTGGGGTTGGGTTTGGGCTTTGGTTCGTGGGCCTGTGA
AA sequence Show only first row Show all	>Lus10010484 pacid=23154101 polypeptide=Lus10010484 locus=Lus10010484.g ID=Lus10010484.BGIv1.0 annot-version=v1.0 MAGVGTMNHAAALAVVVAVLAAAASLLDGAEGQMHHVVGGDRGWELATDLASWLDGRTFHVGDRIWFAYSAAAGGVYELGSKEEYYTCDSANPIKMYTDG LNSIHLTGEGIRYFVSSNTSSCKDGLKLHVEALPREISKGNDGIARPVSISSSDSVLAAEPTAPSGAAHVGGSLLLGGVGFGLWFVGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10010484 [exp]	0	1
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10009352 [exp]	6.3	0.9079
AT2G33855			unknown protein		Lus10013983 [exp]	6.5	0.9055
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10041039 [exp]	13.7	0.8980
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10012452 [exp]	15.1	0.8974
AT1G14345			NAD(P)-linked oxidoreductase s...		Lus10037201 [exp]	16.2	0.8933
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10030301 [exp]	16.4	0.8565
AT5G23060		CaS	calcium sensing receptor (.1)		Lus10000867 [exp]	18.0	0.8862
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031744 [exp]	19.6	0.8964
AT3G02300			Regulator of chromosome conden...		Lus10013197 [exp]	20.5	0.8632
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10007646 [exp]	21.6	0.8654

Compare expression of checked genes

Lus10010484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.