Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06060 276 / 6e-94 TSC10A TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19200 257 / 4e-86 TSC10B TSC10B, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024146 [exp] 310 / 5e-107 AT3G06060 450 / 6e-160 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039501 [exp] 289 / 1e-100 AT3G06060 260 / 2e-87 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034045 [exp] 238 / 1e-81 AT3G06060 176 / 2e-55 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010511 [exp] 170 / 2e-55 AT3G06060 105 / 4e-29 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026851 [exp] 46 / 5e-06 AT3G03330 439 / 7e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191800 [exp] 306 / 1e-105 AT3G06060 448 / 2e-159 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G084100 [exp] 41 / 0.0003 AT3G03330 446 / 2e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10010509 pacid=23156649 polypeptide=Lus10010509 locus=Lus10010509.g ID=Lus10010509.BGIv1.0 annot-version=v1.0 ATGATCGACGTGAATTTGGTCGGGAGCTTCAACGTCGTGAAAGCTGCTCTGCCCGGGATGAAGACCCGGTCCGATCGCCGTCCAGTTTCCATTGCTCTCA TGTCGTCGCAGGCTGGCCAGGTTGGGGTTTATGGATACACTGCTTATGCAGCAAGCAAATTCGGGCTCCGAGGGATGGCGGAGGCACTTCAGCAGGAAGT AATTGCCGATGATATCCATGTCTCTCTTATTTTCCCTCCGGACACTGAAACTCCCGGTCTCATTGAAGAAAACAAGAAGAGGCCGGCATTGACAAGTATC ATAGCAGCAGCATCTGGTGCAATGAAAGCTGAGGATGTTGCTAGGAAGTGTTTGGATGGGATCAAGTCTGCAAGTTTCTTTGTGCCTTGCAACTTCGAGG GTGTGATGCTATCCATCGCAACGGCTGGTTTATCGCCTCAAAGATCGTTCCTGATGGCATTCGTCGAGGTATTTGCTATCGGTCTGATGCGACTTGTAGC ATTGTTCTTCCAGTGGAATTGGTACGGCAGCATTGCAAAATGGCATGCGAAATCTGGTAATGGTAAGTCCCCTGACACCAACTGCATTTAA
AA sequence Show only first row Show all	>Lus10010509 pacid=23156649 polypeptide=Lus10010509 locus=Lus10010509.g ID=Lus10010509.BGIv1.0 annot-version=v1.0 MIDVNLVGSFNVVKAALPGMKTRSDRRPVSIALMSSQAGQVGVYGYTAYAASKFGLRGMAEALQQEVIADDIHVSLIFPPDTETPGLIEENKKRPALTSI IAAASGAMKAEDVARKCLDGIKSASFFVPCNFEGVMLSIATAGLSPQRSFLMAFVEVFAIGLMRLVALFFQWNWYGSIAKWHAKSGNGKSPDTNCI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010509 [exp]	0	1
AT5G19200		TSC10B	TSC10B, NAD(P)-binding Rossman...		Lus10010510 [exp]	1.0	0.9558
AT5G56040			Leucine-rich receptor-like pro...		Lus10018094 [exp]	2.4	0.9538
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010511 [exp]	2.6	0.9449
AT3G55230			Disease resistance-responsive ...		Lus10030318 [exp]	4.9	0.9535
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	6.0	0.9505
AT3G54720		MFO1, HPT, COP2...	PRIMORDIA TIMING, Multifolia, ...		Lus10021090 [exp]	7.5	0.9069
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	7.5	0.9420
AT4G28650			Leucine-rich repeat transmembr...		Lus10025943 [exp]	7.7	0.9339
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10006317 [exp]	9.4	0.9389
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10006664 [exp]	9.8	0.9458

Compare expression of checked genes

Lus10010509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.