Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19200 137 / 9e-40 TSC10B TSC10B, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G06060 132 / 7e-38 TSC10A TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024146 [exp] 152 / 1e-45 AT3G06060 450 / 6e-160 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015821 [exp] 43 / 5e-05 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039502 [exp] 0 / 1 AT3G06060 129 / 3e-37 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191800 [exp] 134 / 7e-39 AT3G06060 448 / 2e-159 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 42 / 5e-05 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 42 / 6e-05 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10010510 pacid=23156686 polypeptide=Lus10010510 locus=Lus10010510.g ID=Lus10010510.BGIv1.0 annot-version=v1.0 ATGGCGGACACGAAGCTCGCTTTTGTCGCCCTTCTAATTCTACTCTTTTTCCCACTAGCTCTCCTGGCTCTCCTAGCCCTAATCGTCCGACCTCGTCCGG TCAAGTTCTCGTTGAAGAACCGCCACGTGTTCATCACCGGCGGATCCAGCGGGATCGGCCTCGCCCTGGCCCACCTGGCTGCGGCGGGAGCTGAAGGGGC CCGCGTCTCCATCCTGGCCCGCTCACTCGACAAGCTGGAAGAGGCCAGGAACTCAATCCGCCTCTCCACGGGGATCGAGGCCGCCATTTACGCCGCCGAC GTTAGGGATTTCGATGCCGTTAAAAACGCTGTTGACGCTGCCGGCCCGATAGACGTCCTGATCGTGAACCAAGGGATCTTCGTCCCCGGAGAGCTTGAGA AGCAGGATCTGAGCGAGGTACGGTTCATGATTGACGTGAATTTGATCGGAAGCTTCAACGTCGTGAAAGCTGCTCTGCGGGGATGA
AA sequence Show only first row Show all	>Lus10010510 pacid=23156686 polypeptide=Lus10010510 locus=Lus10010510.g ID=Lus10010510.BGIv1.0 annot-version=v1.0 MADTKLAFVALLILLFFPLALLALLALIVRPRPVKFSLKNRHVFITGGSSGIGLALAHLAAAGAEGARVSILARSLDKLEEARNSIRLSTGIEAAIYAAD VRDFDAVKNAVDAAGPIDVLIVNQGIFVPGELEKQDLSEVRFMIDVNLIGSFNVVKAALRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19200		TSC10B	TSC10B, NAD(P)-binding Rossman...		Lus10010510 [exp]	0	1
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010509 [exp]	1.0	0.9558
AT3G55230			Disease resistance-responsive ...		Lus10030318 [exp]	4.2	0.9526
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	5.3	0.9424
					Lus10024121 [exp]	5.5	0.9414
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	7.3	0.9443
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	7.3	0.9385
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010511 [exp]	8.0	0.9157
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10001447 [exp]	9.9	0.9142
AT5G62620			Galactosyltransferase family p...		Lus10004256 [exp]	10.6	0.9366
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10006317 [exp]	11.5	0.9334

Compare expression of checked genes

Lus10010510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.