Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13620 571 / 0 Amino acid permease family protein (.1) AT3G19553 337 / 3e-111 Amino acid permease family protein (.1) AT1G31830 311 / 2e-101 Amino acid permease family protein (.1.2) AT5G05630 311 / 8e-101 Amino acid permease family protein (.1) AT1G31820 298 / 5e-96 Amino acid permease family protein (.1) AT3G03720 42 / 0.001 CAT4 cationic amino acid transporter 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034046 [exp] 793 / 0 AT3G13620 641 / 0.0 Amino acid permease family protein (.1) Lus10039180 [exp] 578 / 0 AT3G13620 711 / 0.0 Amino acid permease family protein (.1) Lus10012153 [exp] 327 / 3e-107 AT1G31830 744 / 0.0 Amino acid permease family protein (.1.2) Lus10007593 [exp] 324 / 5e-103 AT1G31830 743 / 0.0 Amino acid permease family protein (.1.2) Lus10040966 [exp] 313 / 1e-101 AT3G19553 694 / 0.0 Amino acid permease family protein (.1) Lus10009849 [exp] 311 / 4e-101 AT3G19553 693 / 0.0 Amino acid permease family protein (.1) Lus10003232 [exp] 306 / 3e-99 AT1G31830 687 / 0.0 Amino acid permease family protein (.1.2) Lus10020320 [exp] 45 / 9e-05 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1) Lus10020322 [exp] 45 / 9e-05 AT1G58030 949 / 0.0 cationic amino acid transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G007300 [exp] 594 / 0 AT3G13620 675 / 0.0 Amino acid permease family protein (.1) Potri.001G007200 [exp] 514 / 0 AT3G13620 567 / 0.0 Amino acid permease family protein (.1) Potri.001G296100 [exp] 322 / 4e-105 AT3G19553 678 / 0.0 Amino acid permease family protein (.1) Potri.009G090300 [exp] 316 / 1e-102 AT3G19553 673 / 0.0 Amino acid permease family protein (.1) Potri.003G103600 [exp] 313 / 1e-101 AT1G31830 694 / 0.0 Amino acid permease family protein (.1.2) Potri.004G178000 [exp] 308 / 5e-100 AT1G31830 637 / 0.0 Amino acid permease family protein (.1.2) Potri.013G065000 [exp] 44 / 0.0002 AT1G58030 873 / 0.0 cationic amino acid transporter 2 (.1) Potri.019G039600 [exp] 43 / 0.0004 AT3G03720 797 / 0.0 cationic amino acid transporter 4 (.1.2) Potri.019G039700 [exp] 42 / 0.0007 AT1G58030 924 / 0.0 cationic amino acid transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10010512 pacid=23156703 polypeptide=Lus10010512 locus=Lus10010512.g ID=Lus10010512.BGIv1.0 annot-version=v1.0 ATGATAGACGAAGAACAGGCCGTCGGAGTAGTACCACCGGCCGCAGCAGGAGGAGGAGCCGTTTCACAACAGAGTTCTTCTCCACTCGACGATTCCTTGA AACCCAGAAAGCTAATCACTCTAGTCCCTCTCATCTTCCTAATCTATTTCGAAGTCGCGGGTGGTCCCTACGGCGAAGAACCGGCCGTCCAAGCCGCCGG ACCTCTCTTCGCTCTTTTGGGGTTTCTCGTCTTCCCATTCATTTGGAGCGTCCCGGAGGCTCTCATCACCGCTGAGCTCTCCACAGCCTTCCCCGGAAAC GGCGGATTCGTGATCTGGGCTCAGCGCGCATTCGGACCCTTTTTCGGATCCCTGATGGGCTCCTGGAAATTCCTGAGTGGGGTAATCAACGTCGCTGCTT TCCCAGTCCTCTGCATCGATTACATGGAGAAGATCTTCCCTGCTTTGGAATCAGGTTGGCCACGTACTGTCGCGATTGTCGTCGCTATCATTGTTCTGTC GTTTATCAACTATTTGGGATTGAACATTGTTGGTTATGCCGCTGTGGGACTCGGAATTGTTTCGCTTTCCCCCTTTATACTGATGACATTGATCGCAATC CCTAAAATCCGACCCCATAGATGGCTTAGTAAGGGGTCGCCAGGGGTGAAGAAAGATTGGAATCTGTTCTTGAACACATTGTTCTGGAACTTGAACTTTT GGGACAATATCAGTACATTAGCTGGGGAAGTTGACAAGCCTGGTAAAAGTTTCCCCGTTGCTCTTCCCGTGGCAGTGATCATAACTTGTCTATCTTATTT AATCCCTCTTATGGCGGTGATCGGAGCTGTCGACGTGAATCAGACAGAATGGGAGTCAGGGTTTCACGCCACTGCTGCTGAGATGATAGCTGGGAAATGG CTGAAGATATGGCTCGAAATCGGTGCAATGCTGTCAGCAATCGGTTTATTTGAGGCTCAGCTGAGTAGCTGCTCGTTCCAGATTTTGGGGATGGCTGAGT TGGGGATTCTCCCCAAATTCTTCGCGGTGAGGTCGAAATGGTTCCATACTCCGTGGCTGGGGATCCTTGTCCCGGCTGTGATGACTCTAGGGGTGTCGTT CTTGCAGTTCACGGATATAATATCGTCGGCCAACTTCATCTATAGCTTGAGCATGCTGCTTGAGTTTGCATCTTTCTTGTGGCTGAGGCGGAAGATGCCC AAGCTCGAGAGGCCGTACAGGATCCCTATGAGGCTTCCCATGCTGTGTTTTCTAAGCTTGATTCCTTGTGCCTTCTTGGTCCTGTTGCTGGCTACTGCTA CCAAGATTGTGTACCTGATTAGTGGGGCCATGACTGGTGGCTCCATTCTGTGGTTTCTCATGATGAGCTTTGGCAGGAAGAAGAACTGCTGCACTTTCAG CATTGATCTCGGACATCAGCCGGATTCCTGA
AA sequence Show only first row Show all	>Lus10010512 pacid=23156703 polypeptide=Lus10010512 locus=Lus10010512.g ID=Lus10010512.BGIv1.0 annot-version=v1.0 MIDEEQAVGVVPPAAAGGGAVSQQSSSPLDDSLKPRKLITLVPLIFLIYFEVAGGPYGEEPAVQAAGPLFALLGFLVFPFIWSVPEALITAELSTAFPGN GGFVIWAQRAFGPFFGSLMGSWKFLSGVINVAAFPVLCIDYMEKIFPALESGWPRTVAIVVAIIVLSFINYLGLNIVGYAAVGLGIVSLSPFILMTLIAI PKIRPHRWLSKGSPGVKKDWNLFLNTLFWNLNFWDNISTLAGEVDKPGKSFPVALPVAVIITCLSYLIPLMAVIGAVDVNQTEWESGFHATAAEMIAGKW LKIWLEIGAMLSAIGLFEAQLSSCSFQILGMAELGILPKFFAVRSKWFHTPWLGILVPAVMTLGVSFLQFTDIISSANFIYSLSMLLEFASFLWLRRKMP KLERPYRIPMRLPMLCFLSLIPCAFLVLLLATATKIVYLISGAMTGGSILWFLMMSFGRKKNCCTFSIDLGHQPDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13620			Amino acid permease family pro...		Lus10010512 [exp]	0	1
AT3G58530			RNI-like superfamily protein (...		Lus10012294 [exp]	6.1	0.9197
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10001997 [exp]	7.7	0.8804
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008927 [exp]	11.5	0.8723
AT1G51060		HTA10	histone H2A 10 (.1)		Lus10042960 [exp]	14.9	0.8944
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Lus10014386 [exp]	16.1	0.9082
AT1G75060			unknown protein		Lus10028777 [exp]	17.7	0.8778
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10008176 [exp]	19.8	0.9059
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10043153 [exp]	21.6	0.8463
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10014996 [exp]	24.6	0.9033
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10026036 [exp]	24.8	0.8957

Compare expression of checked genes

Lus10010512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.