Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26330 170 / 3e-54 Cupredoxin superfamily protein (.1) AT2G26720 118 / 2e-33 Cupredoxin superfamily protein (.1) AT2G31050 113 / 8e-32 Cupredoxin superfamily protein (.1) AT2G32300 101 / 2e-26 UCC1 uclacyanin 1 (.1) AT3G17675 92 / 1e-24 Cupredoxin superfamily protein (.1) AT3G27200 86 / 3e-21 Cupredoxin superfamily protein (.1) AT2G25060 84 / 2e-20 AtENODL14 early nodulin-like protein 14 (.1) AT2G02850 82 / 2e-20 ARPN plantacyanin (.1) AT4G31840 82 / 8e-20 AtENODL15 early nodulin-like protein 15 (.1) AT5G07475 81 / 3e-19 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002451 [exp] 235 / 2e-79 AT5G26330 136 / 2e-40 Cupredoxin superfamily protein (.1) Lus10021925 [exp] 220 / 1e-73 AT5G26330 170 / 5e-54 Cupredoxin superfamily protein (.1) Lus10041211 [exp] 218 / 5e-73 AT5G26330 167 / 6e-53 Cupredoxin superfamily protein (.1) Lus10012165 [exp] 96 / 4e-25 AT5G07475 89 / 1e-22 Cupredoxin superfamily protein (.1) Lus10027143 [exp] 94 / 5e-24 AT2G32300 137 / 9e-40 uclacyanin 1 (.1) Lus10006657 [exp] 96 / 9e-24 AT1G45063 106 / 1e-26 copper ion binding;electron carriers (.1.2) Lus10022350 [exp] 92 / 2e-23 AT3G27200 169 / 7e-54 Cupredoxin superfamily protein (.1) Lus10007026 [exp] 91 / 3e-23 AT2G32300 96 / 4e-25 uclacyanin 1 (.1) Lus10002614 [exp] 90 / 3e-23 AT2G32300 100 / 1e-26 uclacyanin 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089900 [exp] 194 / 1e-63 AT5G26330 187 / 7e-61 Cupredoxin superfamily protein (.1) Potri.008G151000 [exp] 191 / 3e-62 AT5G26330 183 / 2e-59 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 144 / 2e-44 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.006G259000 [exp] 143 / 9e-44 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1) Potri.006G259101 [exp] 143 / 1e-43 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1) Potri.001G268700 [exp] 139 / 3e-42 AT5G26330 138 / 6e-42 Cupredoxin superfamily protein (.1) Potri.002G156100 [exp] 139 / 3e-42 AT5G26330 138 / 1e-41 Cupredoxin superfamily protein (.1) Potri.002G156401 [exp] 139 / 3e-42 AT5G26330 138 / 1e-41 Cupredoxin superfamily protein (.1) Potri.002G052500 [exp] 128 / 7e-38 AT5G26330 130 / 9e-39 Cupredoxin superfamily protein (.1) Potri.003G047300 [exp] 114 / 1e-31 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10010533 pacid=23156640 polypeptide=Lus10010533 locus=Lus10010533.g ID=Lus10010533.BGIv1.0 annot-version=v1.0 ATGAAAATGGTGGCCAGAGCGTTTAGTTTGGCCACAGTGTTGTCAATGGCTGTGTTGTTGCAACAAGTGATCCATGCCCGTGGAGCAGCCGTCCACAAGG TCGGAGACTCCGCCGGTTGGACCACCATTGGAAGTCCCGATTACAAGCAGTGGGCTGCTACTAAATCCTTCCATGTTGGCGACATTGTCCAATTCGAGTA CAGCCCTCAGTTCCACAACGTGATGAGAGTGACCCACGCAATGTACAGAGCATGCAATGCCTCTGCTCCATTGGCAACATACACAACAGGGAATGATTCA GTGAGCATAAGCACCCGCGGCCATCACTACTTCATCTGCGGAGTCAACGGCCATTGCCAGTCCGGCCAGAAGGTTGACATCAACGTCCTTCGTTCTTCAT CTCCAGCTCCATCCTCCATGTCCGCCCCTCAAACTCTACCTTCTGCACAATCGCCTAGTCATTCTGCAAATTCAGCTTCTTCTACCTTTACTCTCACTCA AGCAGCTGCTATTTCCCTCGCCTTCACTATCCTCGCCTCAGCTTGA
AA sequence Show only first row Show all	>Lus10010533 pacid=23156640 polypeptide=Lus10010533 locus=Lus10010533.g ID=Lus10010533.BGIv1.0 annot-version=v1.0 MKMVARAFSLATVLSMAVLLQQVIHARGAAVHKVGDSAGWTTIGSPDYKQWAATKSFHVGDIVQFEYSPQFHNVMRVTHAMYRACNASAPLATYTTGNDS VSISTRGHHYFICGVNGHCQSGQKVDINVLRSSSPAPSSMSAPQTLPSAQSPSHSANSASSTFTLTQAAAISLAFTILASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26330			Cupredoxin superfamily protein...		Lus10010533 [exp]	0	1
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10030473 [exp]	4.0	0.9573
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10003141 [exp]	4.6	0.9654
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Lus10036753 [exp]	5.5	0.9366
AT3G57830			Leucine-rich repeat protein ki...		Lus10023830 [exp]	12.5	0.9471
AT2G33510		AtCFL1	unknown protein		Lus10001804 [exp]	13.3	0.9229
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10011033 [exp]	13.7	0.9212
AT1G23220			Dynein light chain type 1 fami...		Lus10021793 [exp]	18.2	0.9275
AT1G68400			leucine-rich repeat transmembr...		Lus10035138 [exp]	21.6	0.9282
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10011333 [exp]	21.6	0.9426
AT3G57830			Leucine-rich repeat protein ki...		Lus10023831 [exp]	22.3	0.9456

Compare expression of checked genes

Lus10010533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.