Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 387 / 3e-115 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 362 / 3e-105 transmembrane receptors;ATP binding (.1.2) AT1G27180 363 / 4e-105 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 329 / 1e-93 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G17680 309 / 2e-87 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G58120 302 / 4e-86 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G04220 296 / 2e-85 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 300 / 1e-84 Disease resistance protein (TIR-NBS-LRR class) (.1) AT2G14080 300 / 2e-84 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 297 / 2e-83 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004911 [exp] 1746 / 0 AT1G27170 387 / 5e-115 transmembrane receptors;ATP binding (.1.2) Lus10035674 [exp] 1133 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 1078 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020238 [exp] 1025 / 0 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10042714 [exp] 1022 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10017143 [exp] 1008 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10020536 [exp] 984 / 0 AT1G27170 392 / 8e-118 transmembrane receptors;ATP binding (.1.2) Lus10020524 [exp] 982 / 0 AT1G27170 395 / 9e-119 transmembrane receptors;ATP binding (.1.2) Lus10020537 [exp] 978 / 0 AT1G27170 404 / 6e-121 transmembrane receptors;ATP binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002200 [exp] 427 / 3e-132 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 425 / 2e-131 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 428 / 1e-130 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 426 / 6e-130 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 425 / 2e-129 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 425 / 4e-129 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 420 / 6e-128 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 420 / 6e-128 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G206400 [exp] 414 / 1e-127 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 419 / 2e-127 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10010574 pacid=23156636 polypeptide=Lus10010574 locus=Lus10010574.g ID=Lus10010574.BGIv1.0 annot-version=v1.0 ATGAATAATCTTCTTAGTTCCCAATCCACTTCCTCCAAATCTGATCATCATACGCCTCCACTTCCAAATGGAGAGTACGAGGTTTTCTTGAGCTTTAGAG GCCCAGACGTAAGAACTAGTTTTGCTGATTGTCTCTACAGTGGGTTGGTTCGTTCCAGAATCCGCACATTCAGGGATGAGGAAGAGCTTCATAAAGGGGA GATGATTGCCCCTTCCTTAGTCCAAGCCATCACTGAATCCAAAATTTACATTCCAATCTTCACTAAAAGCTATGCTTCCAGCAAATGGTGTTTGATGGAG CTTGCAAAGATGGTCGAGTGTTGGAAGCGAGATAAGGGACATATATTCTTGCCCATTTTCTACTTCGTGGATCCTAGAGATGTTCGGCATCAAGACGGCC CTTTTAAGGAATCATTCCAACACCATGACCAAAAACATGATCCGAATTTGGTACAGAAATGGAGGGAAGCTCTCCAAGATGTCGGCCAAATGAAAGGATG GCACGTTAATGAATCACAAGGACAAGGAGCTGTAATAGATGAGCTACTTTCCAAAGTTGAGTTATATCTGAGGAGCAACTACACAATGGTGACTGAAGAG TTGGTGGGAATTGATTTTCACTTGCAAAGTGTTGGGAAGCTATTGAAACTGGATTCTGATGGTAGTAAAGTAGTCGGTATTCATGGTATGGGTGGCATTG GCAAAACCACTATAGCTAAAGCTGCTTATGATATGGTCAAACACCAATTTGATAAGTGCTGTTTTCTGGAGAATGTACGTTACATATTATCGAAGGATGA CGGTATTATATCTCTGCAGAATAGGGTTATTTCTGGTGTGTTGAGGCATACTTCTACAGTCAATAATGCTAGCGAAGGAATCAACATAATTAGAGACAGG GTATGCAAGTACAAAGTGTTGATAGTTCTTGATGATGTAGATGAAAAATTTGAGTTTGATCAAGTGCTAGGGAAGCTAGACCATTTTTCTTCAGATAGTA GATTCATAGTGACTACAAGAGACAAAAGAGTCTTGGAGTTGCTTCGAGACTATGAGTTATACCAAGTGGACGAAATGCATTATGATCATTCTATTCAACT TTTCAGCAAGCATGCATTTAAGATGGACTATCCTCAAGATGGATACTCAGTGCTATCTGAAGAATTTGTAAAACTAGCCGGAGGTCTTCCTTTAGCTCTT AAGGTTATAGGGTCTCTTTTATTTGATCGACATTCCAAGTTCTGGGAAGAAAAGTTGATAGAGTTAAAAAAAGTACCTTGTACTAGTAATAAGGTGCAAG AGACCTTGAAACTCAGCTATAATGAGTTGAGTCATACGGAAAAGCAAATATTTCTGGATATTTCATGCATATTTGTTGGGGAAGATAAAGAATTGCCTTT TTATATGTGGGTAGATTGTGATTTTTATCCAGAGAGTGGGATTGAGACTCTTATTTTGAGATCATTATTAAAAATTATTGAGGTAAATCATTTTTGGATG CACGATCATGTTATAGATCTTGGTAGGGCCATTGTTGCTGAGGAGGATACTGAGCATCCATTCCAGAGAAGCAGACTATGGTCCGATTATGATGCCTTGA ACATGCTGAAACATAAGAAGGGAACTAGTCGAGCTGAAATCATGCGAGTTCATGTGGAAGATGAGTATAAAATCACAAATGAAGAGTTTAGGAATCTCTC TCGATTAAGATATCTTGAGCTAAAATGTGGAAGGTTAACTGGAGACTTCAGTGGAATACTTCCCAATCTATGCTGGTTTCGACTTGATTGTCGTTGTCGA ATACCAACCAATATCAATATCAAGACATGCATCATTCTTGAGTTGGGTTGGTGCCTAGTTACTGATGATTGGAAAGGCTGGAAACAAATTAAGCTCATGT GGGTGTTCCTTGGAAGATTATTTCAGGTGGCAGGTAAGCTGAAGGTTTTGAAGTTAAGGGCATGCATAAATCTAGAAAAAGCTCCCGACTTGTCTTCATG TGTTGGTCTAGAGGATTTACAGTTAGTGCATTGCGACGAAATGAAAGGGCATCTAGAAATTGGCAACTTCAAGAAGCTCAAGAAACTTGTTGTGAAGAAC AACTACATTACAGAGTTAAGAGGTGATATTGGATTGCTTCAAAATCTTGAAGAGATTGCTCTCAACGATCTCTGTTTAAGAGAAGCCCCTCCAGGAATTG GTAAACTATCGTCTCTTGTATGCTTGGACATAACATCAAGATCTTGCAAGATGGTAGTAAGAGAAGATCTCCCTGCAAGCTTAAAGATACTGTCCATTTC GTTCCCAACGGTTCCAAACCTATTGGAGCTCCAGCAGTTGGAAGAGCTACGCTTTTCCTGTTGTGATGATAAGCCTGAAATTCCAGGAAATTTATGGAAG CTACCAAAGCTGAAGACTTTATCTCTCTGGTATTGCTCCTCCGTAGAATTCACTAGTCTGCTACAAGTCCCTGCTGCCCAGTCAGGATTACCTACTCCTG TCCTCCCATCTTCTCTAAATCGGCTTAATGTTTGTTTCTGTAAGCATTTGCAAACACTGCCCAATCTGGCAAATCTCGATAATCTGACAGAACTTGACCT GAAAGAGGTTATCATACGGGAGATTCCTGGTCTTGGGGAGCTAAAAATGCTAGCAACTTTGCAACTATGGAGCGTGCCAAGCTTGGAACATTTGGATGGA CTTGAAAATCTAGTGATGCTCGCAGAATTGAGTGTACAACGCTGCGGGGTAGTGGGGAAGTTCCCTAATCTGTCGAATTTGATCAAGTTAAACACCCTTG TTGTCCGCGAATGTGGGCTACTCACCGAAATTCAAGGACTGAGTCGGTCTTTAAAAAGTTTGGAAGTAAGTGAGTGTCCTTGCTTATCAAATGTTGAGGG CCTTGAATTTCTAGAATCACTCCATGTTTTGCGGGTGGATAGATGTGACATGTCAGCAAAATGGCTACCACCATCTCTCTCCAAATTGGGTAAACTTGAG GAATTAAGCTATGTGGAAGATGAGAGCCTTCCTGATCATATGTCATTAAAAGCACTTCCACATCTCCCAGAGAGTATAAAGGTATTATTAACAAATAGGT GCAGTGGGTTGGAAGTGATTACAGGGCTAGATCAATTGGAGTCATTGGAGTCGCTAGCTATGCCATGCTGTAAGTCGATTCGGAAGTTGTCAGATTTGTC AAGGCTTAGTAATTTGAAGAAACTAGATGTTAGAGGATGCTTGCAGTTGAGTGAGGTCAGAGGACTTGGAGGATTGATGTCGTTGCAAGAGCTAGTGATT GCCGGATGCAGTTCAGTTGAGGAGCTAGATCTATCTGGTCTCGTGAACTTACGTTTACTTGAAGCTAAAGGATGCACTCGACTTCATAAGGTGAATGGTC TGGAGGATCTGGAGTCGCTACAAGTGTTGGAAATTGACAAGAGGTTGAAATACAAGATTCGGATATTGAAATCTGCGGCAGCAAGATATGGGAAGCGACT AACTCGATTACTGAGGCTGTGA
AA sequence Show only first row Show all	>Lus10010574 pacid=23156636 polypeptide=Lus10010574 locus=Lus10010574.g ID=Lus10010574.BGIv1.0 annot-version=v1.0 MNNLLSSQSTSSKSDHHTPPLPNGEYEVFLSFRGPDVRTSFADCLYSGLVRSRIRTFRDEEELHKGEMIAPSLVQAITESKIYIPIFTKSYASSKWCLME LAKMVECWKRDKGHIFLPIFYFVDPRDVRHQDGPFKESFQHHDQKHDPNLVQKWREALQDVGQMKGWHVNESQGQGAVIDELLSKVELYLRSNYTMVTEE LVGIDFHLQSVGKLLKLDSDGSKVVGIHGMGGIGKTTIAKAAYDMVKHQFDKCCFLENVRYILSKDDGIISLQNRVISGVLRHTSTVNNASEGINIIRDR VCKYKVLIVLDDVDEKFEFDQVLGKLDHFSSDSRFIVTTRDKRVLELLRDYELYQVDEMHYDHSIQLFSKHAFKMDYPQDGYSVLSEEFVKLAGGLPLAL KVIGSLLFDRHSKFWEEKLIELKKVPCTSNKVQETLKLSYNELSHTEKQIFLDISCIFVGEDKELPFYMWVDCDFYPESGIETLILRSLLKIIEVNHFWM HDHVIDLGRAIVAEEDTEHPFQRSRLWSDYDALNMLKHKKGTSRAEIMRVHVEDEYKITNEEFRNLSRLRYLELKCGRLTGDFSGILPNLCWFRLDCRCR IPTNINIKTCIILELGWCLVTDDWKGWKQIKLMWVFLGRLFQVAGKLKVLKLRACINLEKAPDLSSCVGLEDLQLVHCDEMKGHLEIGNFKKLKKLVVKN NYITELRGDIGLLQNLEEIALNDLCLREAPPGIGKLSSLVCLDITSRSCKMVVREDLPASLKILSISFPTVPNLLELQQLEELRFSCCDDKPEIPGNLWK LPKLKTLSLWYCSSVEFTSLLQVPAAQSGLPTPVLPSSLNRLNVCFCKHLQTLPNLANLDNLTELDLKEVIIREIPGLGELKMLATLQLWSVPSLEHLDG LENLVMLAELSVQRCGVVGKFPNLSNLIKLNTLVVRECGLLTEIQGLSRSLKSLEVSECPCLSNVEGLEFLESLHVLRVDRCDMSAKWLPPSLSKLGKLE ELSYVEDESLPDHMSLKALPHLPESIKVLLTNRCSGLEVITGLDQLESLESLAMPCCKSIRKLSDLSRLSNLKKLDVRGCLQLSEVRGLGGLMSLQELVI AGCSSVEELDLSGLVNLRLLEAKGCTRLHKVNGLEDLESLQVLEIDKRLKYKIRILKSAAARYGKRLTRLLRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10010574 [exp]	0	1
					Lus10032008 [exp]	6.0	0.7890
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Lus10012123 [exp]	16.4	0.7650
AT4G31040			CemA-like proton extrusion pro...		Lus10040575 [exp]	18.5	0.7557
AT1G79720			Eukaryotic aspartyl protease f...		Lus10024098 [exp]	21.4	0.7554
AT3G01310			Phosphoglycerate mutase-like f...		Lus10015343 [exp]	23.0	0.7388
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10014930 [exp]	24.3	0.7541
AT5G15070			Phosphoglycerate mutase-like f...		Lus10008307 [exp]	27.0	0.7421
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10024729 [exp]	28.2	0.7541
AT5G24490			30S ribosomal protein, putativ...		Lus10032935 [exp]	36.3	0.7458
AT5G47360			Tetratricopeptide repeat (TPR)...		Lus10034396 [exp]	37.1	0.7068

Compare expression of checked genes

Lus10010574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.