Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23810 544 / 0 AAP7 amino acid permease 7 (.1.2) AT5G09220 483 / 9e-168 AAP2 amino acid permease 2 (.1) AT5G63850 474 / 2e-164 AAP4 amino acid permease 4 (.1) AT1G77380 469 / 2e-162 AAP3, ATAAP3 amino acid permease 3 (.1) AT1G58360 461 / 6e-159 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT1G44100 456 / 5e-157 AAP5 amino acid permease 5 (.1) AT1G10010 452 / 1e-155 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G49630 439 / 1e-150 AAP6 amino acid permease 6 (.1) AT5G40780 150 / 6e-40 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 145 / 2e-38 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027130 [exp] 656 / 0 AT5G23810 509 / 1e-178 amino acid permease 7 (.1.2) Lus10029707 [exp] 474 / 4e-164 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 469 / 3e-162 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 468 / 2e-161 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 464 / 3e-160 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 462 / 2e-159 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 461 / 2e-159 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 452 / 7e-156 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10007235 [exp] 435 / 8e-149 AT5G49630 720 / 0.0 amino acid permease 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G470000 [exp] 665 / 0 AT5G23810 570 / 0.0 amino acid permease 7 (.1.2) Potri.011G167000 [exp] 657 / 0 AT5G23810 573 / 0.0 amino acid permease 7 (.1.2) Potri.011G167200 [exp] 599 / 0 AT5G23810 518 / 0.0 amino acid permease 7 (.1.2) Potri.001G470200 [exp] 572 / 0 AT5G09220 543 / 0.0 amino acid permease 2 (.1) Potri.007G100100 [exp] 484 / 4e-168 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.005G068900 [exp] 483 / 1e-167 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.002G079500 [exp] 471 / 4e-163 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.009G133600 [exp] 472 / 6e-163 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.011G167532 [exp] 473 / 4e-162 AT5G23810 396 / 1e-132 amino acid permease 7 (.1.2) Potri.002G079700 [exp] 464 / 1e-160 AT1G77380 756 / 0.0 amino acid permease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10010580 pacid=23169663 polypeptide=Lus10010580 locus=Lus10010580.g ID=Lus10010580.BGIv1.0 annot-version=v1.0 ATGATGGGGATGATCAGTGGCGAAGTAGTAGTCGAAGAAGAAGAGTCCCCATTAGTAGCAACAAGTAGTACAGAATCAGCAGAGTATGATCACCAGTACC CGTCGTCTACAGGGATCACTGATCATATTTCTGCAGTTTCTAATTCTGACTCAATCTCACCCCACAAATCATCAGCGGAGTCCCAATCAGATCTAGTCAT CAACAGAACTGGAACGAGATGGACAGCGGTGGCACATATAATAACGGCGGTGATAGGAGCAGGAGTATTATCACTAGCATGGGCAGTGGCACAACTAGGG TGGGTGGCCGGACCATTGTCGATGTTAGGCTTCGCTGGAGTGACCTTTGTCTCCTCATCCATCCTCTCCGATTGCTATCGTTACCCTGACCCTGAACTCG GCCCTCACCGCCTCTCTTCCTACTTGGATGCACTCCGCCACTACCTTGGGGAAAGGAGACATCAAATTGGTGCAGTATTAGTTCAGGCAAACCTATTTGG TACTGGAGTTGCTTATACTGTCACCTCCGCCACCAGCATTAGAGCCATTCGTAAATCAAACTGTTACCACAGAGAAGGCCACCAGGCTTCGTGCAACAAT TACGGAGATGGTTTGTACATGTTGCTGTTCGGAGTTGTACAGGTGCTCATGTCACAGATCCCAGACTTCAATAACATGGAATGGCTCTCAATCCTAGCTG CAATCATGTCCTTTGCCTACTCCTTCATCGGCTTCGGCCTTGGATTCTCCAAAGTCATTGAGAATGGAGAGATAAAAGGAAGCATAACAGGAGTCCCAGC TGCAAACACTGCTGACAAAATATGGCTTGCGTTTCAAGCTATTGGCGACATTGCCTTTGCATACCCGTACTCTCTTATTCTTCTCCAAGTACAGGATACT CTGAGGTCACCGCCGGCAGAGAACAAGACAATGAAGAAGGCATCGGTGACAGCAATATTCATCACAACATTCTTCTACTTGTGCTGTGGGTGCTTTGGAT ATGCTTCATTTGGAGCAGCCACTCCTGGGAATCTCCTTACTGGGTTCGGGTTCTACGAGCCTTACTGGCTCATCGACTTTGCTAATGCTTGCGTCGTTCT CCATTTGGTTGGAGGTTATCAGATGTTCAGTCAACCGGTGTACGCATTTGCGGAAGGATGGTATAGGAGCAAGTACCCAGAGAGTGGGTTTGTGAAGAAG CAGTTTAAGGTGAGGGTGAATCTGGGTCCTAAGTATGTTTATAACGTTAGAGGGAGTGCTTTCAGGCTATGCTTCAGGACTGGGTACGTGGCATCCACAA CTGCAGTAGCGATGGTATTCCCTTACTTTAACCAAGTGCTGGGAGTGTTGGGTGGCCTCAACTTCTGGCCACTGTCCATTTATTTCCCAGTGGAGATGTA CTTGGTGCAACGTAAGATTGGGGCTTGGACCAAGGAGTGGATTGTTCTCAGGACATTCAGCCTAGCTTGCCTCCTTGTTTCTGTTTTGGCTCTCATGGGT TCTATTCAAGGTCTCCTCACTGCTAAATTTGGCTGA
AA sequence Show only first row Show all	>Lus10010580 pacid=23169663 polypeptide=Lus10010580 locus=Lus10010580.g ID=Lus10010580.BGIv1.0 annot-version=v1.0 MMGMISGEVVVEEEESPLVATSSTESAEYDHQYPSSTGITDHISAVSNSDSISPHKSSAESQSDLVINRTGTRWTAVAHIITAVIGAGVLSLAWAVAQLG WVAGPLSMLGFAGVTFVSSSILSDCYRYPDPELGPHRLSSYLDALRHYLGERRHQIGAVLVQANLFGTGVAYTVTSATSIRAIRKSNCYHREGHQASCNN YGDGLYMLLFGVVQVLMSQIPDFNNMEWLSILAAIMSFAYSFIGFGLGFSKVIENGEIKGSITGVPAANTADKIWLAFQAIGDIAFAYPYSLILLQVQDT LRSPPAENKTMKKASVTAIFITTFFYLCCGCFGYASFGAATPGNLLTGFGFYEPYWLIDFANACVVLHLVGGYQMFSQPVYAFAEGWYRSKYPESGFVKK QFKVRVNLGPKYVYNVRGSAFRLCFRTGYVASTTAVAMVFPYFNQVLGVLGGLNFWPLSIYFPVEMYLVQRKIGAWTKEWIVLRTFSLACLLVSVLALMG SIQGLLTAKFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10010580 [exp]	0	1
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	1.7	0.9784
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	2.4	0.9762
AT5G61820			unknown protein		Lus10017316 [exp]	3.0	0.9740
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Lus10003435 [exp]	3.7	0.9653
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10033867 [exp]	4.5	0.9707
AT3G46540			ENTH/VHS family protein (.1)		Lus10040297 [exp]	4.9	0.9720
AT5G65500			U-box domain-containing protei...		Lus10025715 [exp]	5.6	0.9531
AT5G61820			unknown protein		Lus10017315 [exp]	5.7	0.9650
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10029684 [exp]	7.7	0.9616
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10014755 [exp]	8.4	0.9619

Compare expression of checked genes

Lus10010580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.