Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75490 161 / 7e-50 AP2_ERF DREB2D Integrase-type DNA-binding superfamily protein (.1) AT5G18450 137 / 1e-39 AP2_ERF DREB2G Integrase-type DNA-binding superfamily protein (.1) AT2G40350 130 / 3e-38 AP2_ERF DREB2H Integrase-type DNA-binding superfamily protein (.1) AT2G40340 130 / 2e-36 AP2_ERF AtERF48, DREB2C Integrase-type DNA-binding superfamily protein (.1) AT3G57600 118 / 3e-32 AP2_ERF DREB2F Integrase-type DNA-binding superfamily protein (.1) AT2G38340 107 / 2e-28 AP2_ERF DREB2E, DREB19 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) AT5G05410 108 / 3e-28 AP2_ERF DREB2A DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE-binding protein 2A (.1.2) AT3G11020 94 / 7e-23 AP2_ERF DREB2B DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE/CRT-binding protein 2B (.1) AT2G33710 92 / 9e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT1G22190 92 / 1e-22 AP2_ERF RAP2.4 related to AP2 4, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006127 [exp] 140 / 4e-41 AT1G75490 155 / 8e-47 Integrase-type DNA-binding superfamily protein (.1) Lus10024298 [exp] 140 / 5e-41 AT1G75490 159 / 1e-48 Integrase-type DNA-binding superfamily protein (.1) Lus10003581 [exp] 136 / 2e-40 AT2G40340 139 / 6e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10002855 [exp] 127 / 3e-35 AT2G40340 132 / 2e-37 Integrase-type DNA-binding superfamily protein (.1) Lus10012226 [exp] 122 / 1e-33 AT2G40340 137 / 2e-37 Integrase-type DNA-binding superfamily protein (.1) Lus10011319 [exp] 117 / 7e-32 AT3G57600 207 / 5e-66 Integrase-type DNA-binding superfamily protein (.1) Lus10034902 [exp] 112 / 3e-30 AT2G40340 172 / 7e-52 Integrase-type DNA-binding superfamily protein (.1) Lus10012210 [exp] 112 / 4e-30 AT3G57600 207 / 4e-66 Integrase-type DNA-binding superfamily protein (.1) Lus10023633 [exp] 112 / 1e-29 AT2G40340 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G233300 [exp] 165 / 5e-51 AT1G75490 161 / 2e-49 Integrase-type DNA-binding superfamily protein (.1) Potri.002G029400 [exp] 157 / 6e-48 AT1G75490 163 / 3e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.006G054500 [exp] 124 / 2e-34 AT3G57600 234 / 1e-76 Integrase-type DNA-binding superfamily protein (.1) Potri.016G053200 [exp] 122 / 9e-34 AT3G57600 256 / 5e-85 Integrase-type DNA-binding superfamily protein (.1) Potri.010G183700 [exp] 116 / 1e-31 AT5G05410 124 / 1e-33 DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE-binding protein 2A (.1.2) Potri.008G073600 [exp] 113 / 2e-30 AT2G40340 129 / 7e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.006G104200 [exp] 97 / 2e-23 AT2G38340 91 / 1e-20 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) Potri.005G168700 [exp] 95 / 6e-23 AT1G78080 197 / 3e-60 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.002G094200 [exp] 94 / 7e-23 AT1G78080 228 / 1e-72 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.001G067600 [exp] 89 / 8e-22 AT5G13330 130 / 1e-37 related to AP2 6l (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10010632 pacid=23143657 polypeptide=Lus10010632 locus=Lus10010632.g ID=Lus10010632.BGIv1.0 annot-version=v1.0 ATGTCCACGTCATCATCCAGCACGGGCGAACCGGGGTCCAACTGGAACCCCCATATGAAAAAGGCGGCCCAAGCCAGCTCGAGAAAGGGGTGCATGCGTG GGAAAGGCGGGCCGGAGAACGCACTATGCAGCTACAAGGGAGTGAGGCAACGCACGTGGGGTAAATGGGTTGCAGAGATCAGGGAACCCAACCGCGGCGC TCGTCTCTGGCTCGGCACCTTCGACACCTCCCACGACGCCGCTTTGGCCTACGACACTGCCGCTCGTAAGCTCTACGGTCCTCACGCCAAGCTCAACTTG CCCAACCACAACGACGTCGTTCACGTTCCGAAACAGGATTCAGGGGATGCGACCACTACTACTAGTAGTAGTTTTGATATGCCGGCAGGCTATTATAATA ATTATTCGTCGAATTCTTCGAGCGAGGAGGGGATAAGTAGCAGTAGTTATGATAATTACAATGAGATAGGAGTGGGGAACGAGTTCTGGTCCAATTTGCA GGTGAATTTGCCGTTGTTTGATGAATCCATATGGGCGGAGGCTGCCATGTCACTGGACTACTTTCCGGTGGTGGCAATGGACGGCGGGCAGTTGGCCGGC GGCTGGGATGCTGCTTCTGCTTCCGCGCCTAACTAG
AA sequence Show only first row Show all	>Lus10010632 pacid=23143657 polypeptide=Lus10010632 locus=Lus10010632.g ID=Lus10010632.BGIv1.0 annot-version=v1.0 MSTSSSSTGEPGSNWNPHMKKAAQASSRKGCMRGKGGPENALCSYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAALAYDTAARKLYGPHAKLNL PNHNDVVHVPKQDSGDATTTTSSSFDMPAGYYNNYSSNSSSEEGISSSSYDNYNEIGVGNEFWSNLQVNLPLFDESIWAEAAMSLDYFPVVAMDGGQLAG GWDAASASAPN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75490	AP2_ERF	DREB2D	Integrase-type DNA-binding sup...		Lus10010632 [exp]	0	1
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10008608 [exp]	13.9	0.8151
AT1G13290	C2H2ZnF	WIP6, DOT5	WIP domain protein 6, DEFECTIV...		Lus10021700 [exp]	18.3	0.7986
AT5G20885			RING/U-box superfamily protein...		Lus10008235 [exp]	20.9	0.7924
AT1G08350			Endomembrane protein 70 protei...		Lus10020613 [exp]	31.6	0.7846
AT4G39140			RING/U-box superfamily protein...		Lus10008046 [exp]	33.1	0.7761
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10024090 [exp]	34.2	0.7890
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036818 [exp]	37.8	0.7865
AT5G10770			Eukaryotic aspartyl protease f...		Lus10026243 [exp]	38.7	0.7543
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012018 [exp]	39.8	0.7597
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008935 [exp]	40.5	0.7815

Compare expression of checked genes

Lus10010632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.