Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19790 108 / 9e-28 AP2_ERF RAP2.11 related to AP2 11 (.1) AT4G27950 64 / 2e-11 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT5G53290 62 / 1e-10 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT4G23750 62 / 1e-10 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT4G11140 61 / 2e-10 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT5G18560 61 / 2e-10 AP2_ERF PUCHI Integrase-type DNA-binding superfamily protein (.1) AT1G50640 60 / 2e-10 AP2_ERF ATERF3 ethylene responsive element binding factor 3 (.1) AT3G20310 60 / 3e-10 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT5G13910 59 / 3e-10 AP2_ERF LEAFY PETIOLE (LEP) LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) AT3G15210 59 / 6e-10 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013614 [exp] 476 / 7e-171 AT5G19790 148 / 6e-43 related to AP2 11 (.1) Lus10013764 [exp] 108 / 2e-27 AT5G19790 132 / 6e-37 related to AP2 11 (.1) Lus10001298 [exp] 91 / 3e-22 AT5G19790 118 / 1e-33 related to AP2 11 (.1) Lus10039171 [exp] 91 / 1e-20 AT5G19790 133 / 3e-37 related to AP2 11 (.1) Lus10012703 [exp] 89 / 1e-19 AT5G19790 119 / 3e-31 related to AP2 11 (.1) Lus10036793 [exp] 89 / 2e-19 AT5G19790 115 / 4e-29 related to AP2 11 (.1) Lus10030430 [exp] 87 / 3e-19 AT5G19790 115 / 1e-29 related to AP2 11 (.1) Lus10037137 [exp] 87 / 5e-19 AT5G19790 116 / 2e-29 related to AP2 11 (.1) Lus10036556 [exp] 74 / 3e-16 AT5G19790 104 / 2e-28 related to AP2 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G056700 [exp] 220 / 9e-71 AT5G19790 105 / 4e-27 related to AP2 11 (.1) Potri.019G036100 [exp] 214 / 3e-68 AT5G19790 98 / 3e-24 related to AP2 11 (.1) Potri.003G220200 [exp] 177 / 5e-54 AT5G19790 164 / 1e-49 related to AP2 11 (.1) Potri.001G004700 [exp] 171 / 2e-51 AT5G19790 112 / 1e-29 related to AP2 11 (.1) Potri.017G087800 [exp] 89 / 9e-20 AT5G19790 89 / 3e-20 related to AP2 11 (.1) Potri.008G091300 [exp] 82 / 1e-17 AT5G19790 80 / 5e-17 related to AP2 11 (.1) Potri.001G453100 [exp] 77 / 6e-16 AT5G19790 71 / 5e-14 related to AP2 11 (.1) Potri.014G076702 [exp] 73 / 1e-14 AT5G19790 74 / 5e-15 related to AP2 11 (.1) Potri.002G153500 [exp] 72 / 2e-14 AT5G19790 79 / 6e-17 related to AP2 11 (.1) Potri.011G148900 [exp] 69 / 4e-13 AT5G19790 65 / 5e-12 related to AP2 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10010652 pacid=23141693 polypeptide=Lus10010652 locus=Lus10010652.g ID=Lus10010652.BGIv1.0 annot-version=v1.0 ATGGAGATTCACTTCCAGCATAATGGAGATGTTACAACTGTTCCAGTAGTGGTTAGCAAACCAAACAAAGGCAAAGGAAGAAGCAGAGTTACTAACTGCA TCAACAGCAGCAACAACAACAGCAAGTTTGTTGGAGTTAGGCAGAGGCCTTCTGGGAGATGGGTTGCTGAGATCAAGGACACTACTAAGAAGATCAGGAT GTGGCTCGGCACTTTCGAGACCGCTGAGGAAGCTGCCAGAGCTTACGACGAAGCTGCTTGTCTCCTTCGCGGTTCCAACACTCGGACCAACTTCATCACT CATGTGTCCTTTGACTCCCCTCTTGCCTCCAGGATTAGAAATCTTCTCGAAAAGAAGAAATCCAACAAGAAAAAACTGCAGGCTGATGCTATTGTACAAG TACCCATCAAACCTGAAGGTCCAGTTCATACCACTAGTCCACCAACTTACTTCGGCAGTAGCTGCAGCACAAGCAGCAGCAGCAGTATCAGTGAGGATAA CTCGAGTTCGAGCGAGACAGTACTGATTCCCGATTCGAGATTGTTCGATGATGTGTACAAGCCTGATCTGAGCACTTGCTGTCAGGAGTTGCAGATTGAG TTGCCTTCTCCTCCAATTGAGCATCAGTCATGTGACGCTTGGAGCTTTGGCCTTGAACACATCAATGGATTTGGTCACAAGTTTCAGTATACATCATCTC AGGATGCTTTTGAATTCCCTAGGAACTACAACAGCATCTGCAGTAGCACATCAGCTGATGATGAGCAGCAGCAGCCAGAGTTCTCAGAATTCGATAGGAT GAAAGTAGAGAGACAGATTTCAGCATCTCTGTATGCGATTAGTGGTGTTCAGGAGTACATGGAAACTGTTAGAGACCCAAATGATGGCTTGTGGGATCTT CCACCATTGTTTTGCTGA
AA sequence Show only first row Show all	>Lus10010652 pacid=23141693 polypeptide=Lus10010652 locus=Lus10010652.g ID=Lus10010652.BGIv1.0 annot-version=v1.0 MEIHFQHNGDVTTVPVVVSKPNKGKGRSRVTNCINSSNNNSKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIT HVSFDSPLASRIRNLLEKKKSNKKKLQADAIVQVPIKPEGPVHTTSPPTYFGSSCSTSSSSSISEDNSSSSETVLIPDSRLFDDVYKPDLSTCCQELQIE LPSPPIEHQSCDAWSFGLEHINGFGHKFQYTSSQDAFEFPRNYNSICSSTSADDEQQQPEFSEFDRMKVERQISASLYAISGVQEYMETVRDPNDGLWDL PPLFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10010652 [exp]	0	1
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	2.4	0.9623
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024685 [exp]	6.3	0.9459
AT1G16310			Cation efflux family protein (...		Lus10001768 [exp]	6.5	0.9582
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017980 [exp]	8.4	0.9461
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016223 [exp]	9.8	0.9397
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10008840 [exp]	10.1	0.9536
AT5G03890			unknown protein		Lus10015117 [exp]	11.0	0.9449
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006835 [exp]	11.1	0.9535
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030590 [exp]	15.0	0.9325
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10017879 [exp]	15.4	0.9427

Compare expression of checked genes

Lus10010652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.