Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62890 885 / 0 Xanthine/uracil permease family protein (.1.2.3.4) AT1G60030 870 / 0 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT5G49990 819 / 0 Xanthine/uracil permease family protein (.1) AT1G10540 791 / 0 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT1G49960 644 / 0 Xanthine/uracil permease family protein (.1) AT1G65550 601 / 0 Xanthine/uracil permease family protein (.1) AT2G34190 598 / 0 Xanthine/uracil permease family protein (.1) AT2G05760 558 / 0 Xanthine/uracil permease family protein (.1) AT2G26510 468 / 9e-161 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT5G25420 422 / 1e-144 Xanthine/uracil/vitamin C permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029191 [exp] 1028 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10004228 [exp] 870 / 0 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10034125 [exp] 860 / 0 AT1G49960 944 / 0.0 Xanthine/uracil permease family protein (.1) Lus10042138 [exp] 835 / 0 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10043460 [exp] 811 / 0 AT5G62890 892 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10033773 [exp] 619 / 0 AT1G49960 695 / 0.0 Xanthine/uracil permease family protein (.1) Lus10036355 [exp] 610 / 0 AT1G65550 748 / 0.0 Xanthine/uracil permease family protein (.1) Lus10014777 [exp] 605 / 0 AT1G65550 751 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 599 / 0 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G146400 [exp] 929 / 0 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.010G095500 [exp] 919 / 0 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.012G077400 [exp] 861 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.015G072600 [exp] 860 / 0 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.009G086800 [exp] 662 / 0 AT1G49960 727 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 597 / 0 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 595 / 0 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 575 / 0 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G015100 [exp] 568 / 0 AT1G65550 559 / 0.0 Xanthine/uracil permease family protein (.1) Potri.002G129400 [exp] 500 / 4e-173 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00860 [flax] [poplar] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Lus10010707 pacid=23148771 polypeptide=Lus10010707 locus=Lus10010707.g ID=Lus10010707.BGIv1.0 annot-version=v1.0 ATGGCAGGAGGAGGACCAGCGCCGCCGCCAAAGCAAGATGAATTACAGCCACATCCAGCGAAAGATCAGCTCCCAAATGTGTCTTACTGCATTACTAGCC CTCCTCCATGGCCTGAGGCAATTATACTTGGGTTTCAGCACTACTTGGTTATGCTTGGTACAACGGTGCTAATCCCAACTTCACTTGTCCCTCAGATGGG AGGTGGAAATGAGGAGAAGGCAAAGATGATTCAGACATTACTATTTGTAGCTGGAGTGAACACTTTTTTCCAAACCATGTTCGGAACACGCTTGCCTGCT GTGATCGGAGCTTCCTATACTTATCTTCCGACGACCATCTCCATCGTTTTGGCTGGCCGGTATAGTGACATTGTGAACCCTACAGAGAAATTCGAGAGGA TTATGCGCGGAACTCAAGGTGCTCTCATTGTTGCTTCCACCCTCCAAATTGTCGTCGGATTCAGTGGCCTTTGGAGAAATGTTGCAAGGTTCCTGAGTCC ACTGTCTGCTGTCCCTTTGGTTGCATTGTCCGGTTTCGGACTCTATGAGTTTGGTTTCCCTCTGATCGCGAAATGTGTGGAGATCGGGCTGCCACAGATC ATCATTCTCATAATCTTTTCCCAGTATATACCTAGCTTGATGAAGGGGGACAAAGCTGTATTTCATCGGTTTGCGGTTCTATTCTCTGTGGTTATAGTCT GGATGTATGCTCACTTGCTCACAGTAGGCGGAGCATACAAAAACGCCGGGCCTAAGACTCAACTAAGTTGCAGAACTGACCGTGCTGGAATCATTGGTGC TGCTCCATGGATAAGAGTTCCATATCCATTCCAATGGGGAGCTCCCACTTTCGATGCTGGAGAGGCCTTTGCAATGATGATGGCTTCTTTTGTTTCTCTT ATAGAGTCAACTGGCGGTTTCATTGCTGTGTCGAGGTATGCAAGTGCGACTCCGATGCCTCCTTCTATTCTTAGCCGCGGTGTTGGTTGGCAGGGTGTTG GAATTCTGTTCTCGGGGATATTCGGGACTGGGAATGGATGTGCAGTGTCTGTTGAAAATGCTGGTTTGTTGGCTTTGACAAGAGTTGGCAGCAGAAGGGT GGTTCAGATATCAGCTGGCTTCATGATTTTCTTCTCCATTCTTGGAAAATTTGGAGCTGTCTTTGCATCGATTCCTGCTCCGATCGTTGCAGCTCTTTAC TGTCTTTTCTTTGCCTATGTCGGCTCAGCTGGTCTTGGTTACCTCCAGTTCTGCAACTTAAACAGCTTCAGAGTAAAGTTCATCCTAGGCTTCTCCTTCT TCATGGGTCTATCCATCCCACAATACTTCAACGAGTACACCGCCATAAATGGCTACGGTCCAGTCCACACCGGTGCAAGATGGTTCAACGACATGGTCAA CGTGCCATTTTCGTCCGAGGCGTTTGTGGCCGGGATACTGGCCATGTTCTTGGACGTGACAATGCACAAGAAGGAAAATGCGATCAGGAAAGACAGAGGG ATGCACTGGTGGGACAAGTTCAGGTCGTTTAAGACCGACACGAGGAGCGAAGAGTTCTACTCTCTGCCATTCAACCTCAACAAGTTCTTCCCATCTGTTT AG
AA sequence Show only first row Show all	>Lus10010707 pacid=23148771 polypeptide=Lus10010707 locus=Lus10010707.g ID=Lus10010707.BGIv1.0 annot-version=v1.0 MAGGGPAPPPKQDELQPHPAKDQLPNVSYCITSPPPWPEAIILGFQHYLVMLGTTVLIPTSLVPQMGGGNEEKAKMIQTLLFVAGVNTFFQTMFGTRLPA VIGASYTYLPTTISIVLAGRYSDIVNPTEKFERIMRGTQGALIVASTLQIVVGFSGLWRNVARFLSPLSAVPLVALSGFGLYEFGFPLIAKCVEIGLPQI IILIIFSQYIPSLMKGDKAVFHRFAVLFSVVIVWMYAHLLTVGGAYKNAGPKTQLSCRTDRAGIIGAAPWIRVPYPFQWGAPTFDAGEAFAMMMASFVSL IESTGGFIAVSRYASATPMPPSILSRGVGWQGVGILFSGIFGTGNGCAVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALY CLFFAYVGSAGLGYLQFCNLNSFRVKFILGFSFFMGLSIPQYFNEYTAINGYGPVHTGARWFNDMVNVPFSSEAFVAGILAMFLDVTMHKKENAIRKDRG MHWWDKFRSFKTDTRSEEFYSLPFNLNKFFPSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62890			Xanthine/uracil permease famil...		Lus10010707 [exp]	0	1
AT1G67720			Leucine-rich repeat protein ki...		Lus10037051 [exp]	1.4	0.9405
AT1G67720			Leucine-rich repeat protein ki...		Lus10036935 [exp]	2.4	0.9275
AT2G01913			unknown protein		Lus10035103 [exp]	3.5	0.9019
AT2G01913			unknown protein		Lus10031943 [exp]	3.7	0.8985
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Lus10004690 [exp]	4.5	0.9116
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10005956 [exp]	6.3	0.9053
AT1G67790			unknown protein		Lus10034566 [exp]	7.3	0.9140
AT1G70280			NHL domain-containing protein ...		Lus10032158 [exp]	7.7	0.8908
AT4G13600			Carbohydrate-binding X8 domain...		Lus10032601 [exp]	8.1	0.8843
AT5G62890			Xanthine/uracil permease famil...		Lus10029191 [exp]	9.4	0.8963

Compare expression of checked genes

Lus10010707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.