Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70000 179 / 2e-55 MYB myb-like transcription factor family protein (.1.2) AT5G47390 147 / 3e-42 MYB myb-like transcription factor family protein (.1) AT1G74840 140 / 7e-41 MYB Homeodomain-like superfamily protein (.1.2) AT1G19000 137 / 9e-39 MYB Homeodomain-like superfamily protein (.1.2) AT3G16350 134 / 1e-36 MYB Homeodomain-like superfamily protein (.1) AT5G61620 122 / 6e-33 MYB myb-like transcription factor family protein (.1) AT5G56840 108 / 2e-28 MYB myb-like transcription factor family protein (.1) AT5G04760 107 / 2e-28 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G58900 106 / 3e-27 MYB Homeodomain-like transcriptional regulator (.1) AT5G08520 106 / 5e-27 MYB Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036678 [exp] 326 / 2e-113 AT1G70000 171 / 1e-52 myb-like transcription factor family protein (.1.2) Lus10013289 [exp] 224 / 9e-73 AT1G70000 235 / 5e-77 myb-like transcription factor family protein (.1.2) Lus10030813 [exp] 212 / 6e-68 AT1G70000 229 / 7e-75 myb-like transcription factor family protein (.1.2) Lus10036652 [exp] 152 / 2e-44 AT1G74840 176 / 4e-54 Homeodomain-like superfamily protein (.1.2) Lus10037560 [exp] 143 / 2e-40 AT3G16350 303 / 8e-101 Homeodomain-like superfamily protein (.1) Lus10004384 [exp] 142 / 3e-40 AT5G47390 394 / 3e-137 myb-like transcription factor family protein (.1) Lus10040181 [exp] 142 / 4e-40 AT5G47390 398 / 1e-138 myb-like transcription factor family protein (.1) Lus10038279 [exp] 135 / 5e-37 AT3G16350 279 / 5e-91 Homeodomain-like superfamily protein (.1) Lus10025822 [exp] 129 / 6e-35 AT3G16350 283 / 2e-92 Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G191800 [exp] 199 / 1e-62 AT1G70000 241 / 5e-79 myb-like transcription factor family protein (.1.2) Potri.010G039233 [exp] 197 / 4e-62 AT1G70000 230 / 7e-75 myb-like transcription factor family protein (.1.2) Potri.003G079500 [exp] 144 / 6e-41 AT5G47390 355 / 4e-122 myb-like transcription factor family protein (.1) Potri.015G069000 [exp] 139 / 3e-39 AT1G70000 132 / 8e-37 myb-like transcription factor family protein (.1.2) Potri.001G189800 [exp] 137 / 3e-38 AT3G16350 307 / 2e-102 Homeodomain-like superfamily protein (.1) Potri.001G155300 [exp] 136 / 4e-38 AT5G47390 340 / 7e-116 myb-like transcription factor family protein (.1) Potri.012G073900 [exp] 131 / 2e-36 AT1G74840 152 / 2e-44 Homeodomain-like superfamily protein (.1.2) Potri.003G049100 [exp] 130 / 2e-35 AT3G16350 311 / 8e-104 Homeodomain-like superfamily protein (.1) Potri.006G230500 [exp] 115 / 7e-31 AT5G56840 167 / 1e-51 myb-like transcription factor family protein (.1) Potri.001G080300 [exp] 111 / 1e-28 AT5G61620 176 / 1e-52 myb-like transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10010733 pacid=23148711 polypeptide=Lus10010733 locus=Lus10010733.g ID=Lus10010733.BGIv1.0 annot-version=v1.0 ATGTCTATCAATTCCGGCGATGGAAGCTCCCACGGCGGGGATCGCAGCCCAGCGGCCGCGGAGAACGGAATCATGCTGTTCGGAGTCCGAGTCACCCAAG GGATGAACTCGTTCCGTAAGAGTTCGAGTATGCACAACTTGTCCCAGTACGATCAGGCCAATCAGGACCCAATCGACGCCGTTCACGCGTCCGGTTACGA GTCCGACGACGTCGTTCACCCCTCCGCCAGAAGCAGCGACCGCAAACGGGGGGTGGCGTGGACAGAGGAGGAGCATAGATTGTTCCTGGTGGGGCTACAG AGAGTCGGTAAAGGAGATTGGAGGGGGATCTCGAGGAACTTCGTGAAGACGAGGACTCCGACGCAGGTAGCGAGTCACGCTCAGAAGTACTTCCTCCGGC GGAACAACCAGAATCGGCGGCGGCGGAGGTCCAGCCTCTTCGACATCACCACTGATTCAGTAAGTTCCCGGTTAAAAATTGAGGGGGAAATATTATCATC GCCGAATCAAGAGTCGGCGATGAACCAGATGGGGAAGCTGCCGGTCTCCGGAGAGGACTCTTTCGAGAAGCTGACTTTAGGTCTGGGTAAAGTTTCCCGT CCGATGCCAATTCCACCATCGTCCAAGATGGCTGGTCTTAGTTTGGGCCGGAGTGGCGAATCCGGCGGTCAGGAACTATCGCTGAAGATGTCTAGTTATT CTTCGCCGGAGGAAAAGCCATCTCAGCCGCAGCCGGCGGGGAGGTCGGCTGGTTTCCAGGCGATGTCTAGTGGCGACAGCATAATTAGCGTTGCGTAA
AA sequence Show only first row Show all	>Lus10010733 pacid=23148711 polypeptide=Lus10010733 locus=Lus10010733.g ID=Lus10010733.BGIv1.0 annot-version=v1.0 MSINSGDGSSHGGDRSPAAAENGIMLFGVRVTQGMNSFRKSSSMHNLSQYDQANQDPIDAVHASGYESDDVVHPSARSSDRKRGVAWTEEEHRLFLVGLQ RVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNQNRRRRRSSLFDITTDSVSSRLKIEGEILSSPNQESAMNQMGKLPVSGEDSFEKLTLGLGKVSR PMPIPPSSKMAGLSLGRSGESGGQELSLKMSSYSSPEEKPSQPQPAGRSAGFQAMSSGDSIISVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70000	MYB		myb-like transcription factor ...		Lus10010733 [exp]	0	1
AT3G06780			glycine-rich protein (.1)		Lus10037706 [exp]	1.4	0.9201
AT1G07080			Thioredoxin superfamily protei...		Lus10042270 [exp]	1.4	0.8943
AT5G49610			F-box family protein (.1)		Lus10017086 [exp]	2.0	0.8846
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015807 [exp]	3.2	0.8841
AT3G27250			unknown protein		Lus10032077 [exp]	5.9	0.8827
					Lus10035430 [exp]	8.8	0.8441
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003399 [exp]	9.9	0.8935
AT1G44414			unknown protein		Lus10025672 [exp]	10.1	0.8829
AT1G26800			RING/U-box superfamily protein...		Lus10037170 [exp]	10.4	0.8540
AT1G53900			Eukaryotic translation initiat...		Lus10037451 [exp]	11.0	0.8333

Compare expression of checked genes

Lus10010733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.