Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28220 326 / 3e-110 ATPUP3 purine permease 3 (.1) AT1G28230 289 / 9e-96 ATPUP1, PUP1 purine permease 1 (.1) AT2G33750 288 / 2e-95 ATPUP2 purine permease 2 (.1.2) AT4G18220 179 / 3e-53 Drug/metabolite transporter superfamily protein (.1) AT4G18210 163 / 1e-46 ATPUP10 purine permease 10 (.1) AT1G30840 159 / 3e-45 ATPUP4 purine permease 4 (.1.2) AT4G18205 158 / 8e-45 AT4G18200 Nucleotide-sugar transporter family protein (.1) AT4G18195 145 / 8e-40 ATPUP8, AT4G18200 ARABIDOPSIS THALIANA PURINE PERMEASE 8, purine permease 8 (.1) AT4G18197 142 / 7e-39 PEX17, ATPUP7, AT4G18200 PEROXIN 17, ARABIDOPSIS THALIANA PURINE PERMEASE 7, purine permease 7 (.1) AT4G08700 141 / 8e-39 ATPUP13 Drug/metabolite transporter superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035636 [exp] 643 / 0 AT1G28220 346 / 3e-118 purine permease 3 (.1) Lus10020416 [exp] 481 / 2e-171 AT1G28220 341 / 2e-116 purine permease 3 (.1) Lus10015832 [exp] 477 / 1e-169 AT1G28220 348 / 5e-119 purine permease 3 (.1) Lus10020950 [exp] 344 / 6e-117 AT1G28220 448 / 3e-158 purine permease 3 (.1) Lus10015906 [exp] 316 / 9e-107 AT1G28220 406 / 2e-142 purine permease 3 (.1) Lus10041133 [exp] 296 / 4e-99 AT1G28220 392 / 1e-136 purine permease 3 (.1) Lus10036465 [exp] 297 / 2e-98 AT1G28220 394 / 1e-136 purine permease 3 (.1) Lus10008714 [exp] 227 / 3e-71 AT1G28220 286 / 7e-95 purine permease 3 (.1) Lus10020939 [exp] 223 / 5e-70 AT1G28220 286 / 9e-95 purine permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160300 [exp] 357 / 2e-122 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.002G099600 [exp] 267 / 3e-87 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.001G352100 [exp] 186 / 3e-55 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.001G147600 [exp] 179 / 2e-52 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.014G043900 [exp] 172 / 3e-50 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.001G352200 [exp] 161 / 4e-46 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.006G184900 [exp] 153 / 5e-43 AT2G24220 404 / 6e-141 purine permease 5 (.1.2) Potri.003G156900 [exp] 134 / 1e-35 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G074100 [exp] 130 / 1e-34 AT1G30840 303 / 5e-101 purine permease 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10010757 pacid=23148744 polypeptide=Lus10010757 locus=Lus10010757.g ID=Lus10010757.BGIv1.0 annot-version=v1.0 ATGAAAATGGAGAATATGGAAGCAAACAAAATACGGTCGTCGTCGGACGAGGAAACAACGGGGATGAGTAAATCAATGAAGAGAACCCTTCTAATAGTCA ACTGCGTCCTCCTATCCATAGGCAGTGCAGTGGGCCCACTTATCATCCGCCTCTACTTCATAAAGGGCGGCACCGGAGTATGGACCTCCGCCGCCCTGGA GACCGCCGGCTGGCCGGTAATAATATTCCCACTCATTGCGTCCTTCATCTTCCGCCGGAGCAGAAACGGCCCGGAAGAAACGGTCGTCTCCTTCATCACC TGGCGCCTCGCCCTGGCCTCGGCTGTGTTTGGAATCTTGACCGGACTTGACGACTTCCTCTACGCCTCCGGGGTCAACTACCTCCCCGTGTCCACGTCGG CGCTCATCATCGCGTCACAGCTGGCGTTCACGGCCGTGTTCGCTTTCCTCCTGGTCAGGCAGAAGTTCACGGCGTTTTCGGTCAACGCTATTTTCTTGCT GTGTTTAGGGGCCGCGACGCTTGCGGTGAACACCAGCTCCGACCGGCCTGCGGGGGAGACCGCCGCGCAGTACTTCAAGGGGTTCTTCATGACGGTGGGT GCCGCTGTTCTCTATGGATTCGTGCTCCCGGGGATAGAGCTGACATACAAGAAGGCCGAGCAGGCTATCACGTACACGCTCGTACTGGAGATGCAGATGG TCATCTCTTTCTTCGCCACCGCTTTCAACGTCGTCGGGATGATCGTCCACAAGGAGTTCCAGATAATGCCGCGGGAAGCAGCGGAGTTTCAGATGGGGAA AGTGGGGTACTGCTTGGTGCTGGTGGGTGTGGCGTTGGTATGGCAGTGCTTCTTCGTGGGAGCAGTTGGGGTAGTGTCGTGTGGTTCATCGTTGCTCTCC GGTGTTCTCATTGCTACTTTCTTACCGATTACCGAGGTATTGGCGGTGTTCATATACCACGAGGAGTTTGGACCTCAGAAAGCCGTCGCACTTATCCTCT CTCTCTGGGGATTCGTTTCTTACTTTTATGGAGAGTACAAACTCATGAATAATGACGCTGCACGTCCTACCCCTGCTTGA
AA sequence Show only first row Show all	>Lus10010757 pacid=23148744 polypeptide=Lus10010757 locus=Lus10010757.g ID=Lus10010757.BGIv1.0 annot-version=v1.0 MKMENMEANKIRSSSDEETTGMSKSMKRTLLIVNCVLLSIGSAVGPLIIRLYFIKGGTGVWTSAALETAGWPVIIFPLIASFIFRRSRNGPEETVVSFIT WRLALASAVFGILTGLDDFLYASGVNYLPVSTSALIIASQLAFTAVFAFLLVRQKFTAFSVNAIFLLCLGAATLAVNTSSDRPAGETAAQYFKGFFMTVG AAVLYGFVLPGIELTYKKAEQAITYTLVLEMQMVISFFATAFNVVGMIVHKEFQIMPREAAEFQMGKVGYCLVLVGVALVWQCFFVGAVGVVSCGSSLLS GVLIATFLPITEVLAVFIYHEEFGPQKAVALILSLWGFVSYFYGEYKLMNNDAARPTPA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10010757 [exp]	0	1

Compare expression of checked genes

Lus10010757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.