Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37650 553 / 0 GRAS SCL9 GRAS family transcription factor (.1) AT1G07530 427 / 7e-140 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G29065 399 / 6e-131 GRAS family transcription factor (.1) AT2G29060 401 / 9e-131 GRAS GRAS family transcription factor (.1) AT3G46600 353 / 2e-115 GRAS GRAS family transcription factor (.1.2.3) AT5G59450 356 / 1e-114 GRAS SCL11 GRAS family transcription factor (.1) AT1G07520 353 / 3e-112 GRAS GRAS family transcription factor (.1) AT4G17230 172 / 2e-46 GRAS SCL13 SCARECROW-like 13 (.1) AT5G48150 163 / 2e-43 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 157 / 5e-42 GRAS SCL21 SCARECROW-like 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024384 [exp] 855 / 0 AT2G37650 610 / 0.0 GRAS family transcription factor (.1) Lus10016521 [exp] 513 / 4e-173 AT1G07530 764 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040284 [exp] 508 / 3e-171 AT1G07530 600 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10023404 [exp] 508 / 5e-171 AT1G07530 595 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040790 [exp] 477 / 2e-159 AT1G07530 762 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040787 [exp] 420 / 1e-138 AT1G07530 555 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10004968 [exp] 411 / 3e-134 AT1G07530 584 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10001577 [exp] 405 / 3e-132 AT1G07530 573 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016519 [exp] 361 / 7e-120 AT1G07530 449 / 3e-153 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G086600 [exp] 760 / 0 AT2G37650 723 / 0.0 GRAS family transcription factor (.1) Potri.008G057400 [exp] 543 / 0 AT2G37650 568 / 0.0 GRAS family transcription factor (.1) Potri.009G032700 [exp] 509 / 1e-171 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G033300 [exp] 506 / 4e-171 AT1G07530 514 / 4e-173 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032800 [exp] 499 / 2e-167 AT1G07530 666 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G242100 [exp] 495 / 4e-167 AT2G29060 563 / 0.0 GRAS family transcription factor (.1) Potri.010G202300 [exp] 489 / 2e-165 AT1G07530 498 / 2e-167 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G033100 [exp] 471 / 1e-158 AT2G29060 506 / 1e-171 GRAS family transcription factor (.1) Potri.001G242000 [exp] 466 / 1e-156 AT2G29060 488 / 9e-165 GRAS family transcription factor (.1) Potri.001G241700 [exp] 456 / 3e-151 AT1G07530 759 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10010845 pacid=23163418 polypeptide=Lus10010845 locus=Lus10010845.g ID=Lus10010845.BGIv1.0 annot-version=v1.0 ATGGATCCACGCTTAAGCAGATTCTCCAGCTCCAATCATGTAGCCGCACAATTGATAGAACAGCCCGTCTCTGTTCTTCCCAATCCAACTTTCAACACTT TTAAAGGGTTTCAACATTCAAATGAAACCCCCAATTTGAGTACTGTGACTCAACAAGAAGAAGAAGAAGACTGTGATTTTTCAGATACAGTGTTGAGCTA CATAAGCCAGATTCTTATGGACGAAGAAATGGAGGACAAAACCTGTATGCTTCAGGACTCATTAGATCTCCAGGCAGCCGAGAAATCATTCTACGACGTC CTAGGCAAGAAATACCCACCTTCACCTGAGCCAAGCACCCACCTTTACAACCCTAACAATGGATTCAGCTACTTAGATGGTATTAATGCCAGCTGGAATT TCAACCAGACTGACTATGATCCCTTTCAGCTATCTCAATCTTCATACACTTCTTCCAACAATAGTGTCGGCACAAGCACCACCACGGATGGATTGGTGGA CTCTCCAAGCACCAGCACGTTCAAGTTCCCCGATTTCGGCAGTGAAAGCCAATCCATTTCGCAGTTCAACAAAGGTGTTGAAGAAGCTAACAAATTCCTT CCAAATGGCAACAACCTGTTCCTTAATATCCAGACCAATGCGCGAATCTGCGCATCCAATGATGTAAAGGTGGAATCTTTACCAAGAGGAAGGAAGAATC TTCTGATAAGAGAGGATGTACCAATTGAAGAAGACAGGAGTACCAAAGTTTTAGCTGTTCACAAAGATTCCAATTTGCCACCGGATGTATTCGACAGTGT GCTTCTCTGTAGTGTAGGCAAAGGCAAAGAAGACTTGACCGCTCTCCGCGAGTCGTTGAAGAACGCCACGATAAGAGACATCCAGAACGGACAGCACAGG ACATTTCGTCAAGGGAGAGGTCGTGTGAAGAAAGGCGTTGCGAAAAAGGACGTAGTGGACTTGAGAACATTGCTCATCACTTGTGCTCAAGCTGTTGCTG CCGATGATGGAACCAGTGCCAGCAAATTGCTCAAGCAGATTCGTCTCCATTCGTCTCCTTTCGGGGATGCGAATCAGAGACTGGCGAATTGTTTCGCCGA TGGATTGGAAGCTCGACTCGCGGGGACCGGTAGCCAGATCTACAAAGGGCTTGACCGTGTCGGGGGATGCAACGAAGGTCCATGTGATAGATTTCGGAGT TCTTTACGGATTTCAATGGCCGACTCCATTCAACGCATGTCGTGGAGACCAGGTGGACCTCCTAAACTTCGTGTCACGGGGATAGATTTCCCGCAGCCTG GATTCAGACCGGCTGAGCGAGTGGAAGAGACCGGGCGGAGGCTGGCAGCCTATGCTGAGAAGTTCAAGGTACCATTTGAGTACAATGCGATCGCGAAGAG ATGGGAGAATGTGCAGCTGGAGGATCTCAAGATCGAAAAGGACGAATTTGTAATTGTGAATTGCTTGTACAGGGCTAAGAACTTGCTGGATGAAACGGTT TGTGTGGACAGTCCGAGGAAGATAGTCCTCGGGTTGATCAAGAGGATCAACCCTCGACTTTTCATCCACGGGGTAATAAACGGGGCGTTCAATGCTCCGT TTTTCGTGACTAGATTCAGGGAGGCGTTGTTTCACTTTTCGGCCATGTTCGATATGCTCGAAACCGTGGTGCCCCGAGAAGATCAGGAGAGGATGCTGAT AGAGAAAGAAATATTCGGCAGGGAGGCTTTGAATGTTATTGCTTGTGAAGGGTGGGGGAGAGTGGAGAGGCCTGAAACTTACAAGCAGTGGCAAGTTCGT TGCCTCAGGGCCGGTTTCGAGCAGCTGCATTGGGATAAGGAGACCATGAAAGAAGCTAATAAGAAAGCTAAAGAACTTTACCACAAAGATTTCTTGATTG ACGAGGATAACAAATGGCTGTTGCAAGGATGGAAAGGCCGAATCATTTATGCTCTTTCAGTGTGGAAGCCGGCATCTTAA
AA sequence Show only first row Show all	>Lus10010845 pacid=23163418 polypeptide=Lus10010845 locus=Lus10010845.g ID=Lus10010845.BGIv1.0 annot-version=v1.0 MDPRLSRFSSSNHVAAQLIEQPVSVLPNPTFNTFKGFQHSNETPNLSTVTQQEEEEDCDFSDTVLSYISQILMDEEMEDKTCMLQDSLDLQAAEKSFYDV LGKKYPPSPEPSTHLYNPNNGFSYLDGINASWNFNQTDYDPFQLSQSSYTSSNNSVGTSTTTDGLVDSPSTSTFKFPDFGSESQSISQFNKGVEEANKFL PNGNNLFLNIQTNARICASNDVKVESLPRGRKNLLIREDVPIEEDRSTKVLAVHKDSNLPPDVFDSVLLCSVGKGKEDLTALRESLKNATIRDIQNGQHR TFRQGRGRVKKGVAKKDVVDLRTLLITCAQAVAADDGTSASKLLKQIRLHSSPFGDANQRLANCFADGLEARLAGTGSQIYKGLDRVGGCNEGPCDRFRS SLRISMADSIQRMSWRPGGPPKLRVTGIDFPQPGFRPAERVEETGRRLAAYAEKFKVPFEYNAIAKRWENVQLEDLKIEKDEFVIVNCLYRAKNLLDETV CVDSPRKIVLGLIKRINPRLFIHGVINGAFNAPFFVTRFREALFHFSAMFDMLETVVPREDQERMLIEKEIFGREALNVIACEGWGRVERPETYKQWQVR CLRAGFEQLHWDKETMKEANKKAKELYHKDFLIDEDNKWLLQGWKGRIIYALSVWKPAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Lus10010845 [exp]	0	1
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10006633 [exp]	2.6	0.9256
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002021 [exp]	5.7	0.9215
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10035790 [exp]	9.8	0.9195
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	11.0	0.8855
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10042891 [exp]	11.0	0.9073
AT2G29200		APUM1	pumilio 1 (.1)		Lus10004976 [exp]	11.2	0.8854
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10020761 [exp]	11.7	0.9072
AT5G57250			Pentatricopeptide repeat (PPR)...		Lus10036510 [exp]	12.6	0.8912
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10027018 [exp]	12.6	0.8971
AT3G56510			RNA-binding (RRM/RBD/RNP motif...		Lus10032099 [exp]	13.3	0.9026

Compare expression of checked genes

Lus10010845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.