Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60020 837 / 0 LAC17, ATLAC17 laccase 17 (.1) AT2G29130 818 / 0 LAC2, ATLAC2 laccase 2 (.1) AT3G23330 786 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G03260 608 / 0 LAC11 laccase 11 (.1) AT2G38080 601 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G01190 582 / 0 LAC10 laccase 10 (.1) AT1G18140 570 / 0 LAC1, ATLAC1 laccase 1 (.1) AT5G58910 559 / 0 LAC16 laccase 16 (.1) AT5G05390 553 / 0 LAC12 laccase 12 (.1) AT2G40370 546 / 2e-180 LAC5 laccase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024381 [exp] 1429 / 0 AT3G23330 777 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024378 [exp] 1132 / 0 AT5G60020 853 / 0.0 laccase 17 (.1) Lus10034439 [exp] 857 / 0 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10019122 [exp] 856 / 0 AT5G60020 938 / 0.0 laccase 17 (.1) Lus10034614 [exp] 836 / 0 AT5G60020 934 / 0.0 laccase 17 (.1) Lus10035517 [exp] 641 / 0 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10027782 [exp] 624 / 0 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10026512 [exp] 614 / 0 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10002227 [exp] 613 / 0 AT5G03260 926 / 0.0 laccase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G087100 [exp] 912 / 0 AT5G60020 802 / 0.0 laccase 17 (.1) Potri.001G401300 [exp] 877 / 0 AT5G60020 904 / 0.0 laccase 17 (.1) Potri.001G341600 [exp] 873 / 0 AT5G60020 896 / 0.0 laccase 17 (.1) Potri.001G054600 [exp] 863 / 0 AT5G60020 905 / 0.0 laccase 17 (.1) Potri.009G034500 [exp] 853 / 0 AT2G29130 844 / 0.0 laccase 2 (.1) Potri.011G120300 [exp] 843 / 0 AT5G60020 875 / 0.0 laccase 17 (.1) Potri.011G120200 [exp] 842 / 0 AT5G60020 875 / 0.0 laccase 17 (.1) Potri.009G156600 [exp] 839 / 0 AT2G29130 831 / 0.0 laccase 2 (.1) Potri.009G156800 [exp] 839 / 0 AT2G29130 831 / 0.0 laccase 2 (.1) Potri.001G184300 [exp] 835 / 0 AT2G29130 830 / 0.0 laccase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10010850 pacid=23163444 polypeptide=Lus10010850 locus=Lus10010850.g ID=Lus10010850.BGIv1.0 annot-version=v1.0 ATGGCTGCTACGGTGGAGGTTCTCGGAGCGGTTCTCCGAAAGCCGGAATCCATCAGCACCAAAATCCAAGTCAAACAGCTCCTGAAGTCCCTTCTCAATC GTCCCGGCGCCATCACCACTAAATCCGAAGCCAAGCAGCTCCACGCCCAAATTCTCAAGTTCAACCCTTCCTCACCCGTTTACATATCTGCAGCCATTTG TGTCTACTCCAACTTCAGTCTCTTAAAAGAATCCCTCATCCTGTTTGACTCCCTCCAGTTCCCGCCTTCTCTCGCCTACAAATCCATCGTCAGATGCTAC GCCGTGAATGGCCTATTTGTTGAGTCACTCTCCTCTTTTATAGAAATGAGAGCGTCCGGTAAGAACCCCGACCATACCGTGTTTCCTTCCGTTCTTAAAG CTTGCACGTTTTTATCGGATATGAAATTGGGAGAGGCGCTTCATGGGTGCATTATTAGGGTTGGAATGGACATCCATTTGACTACGGGAAATGCCCTCCT TAATATGTACGCCAAACTCCAGAGTTTGGCTGAGATTGAGTGGCGTAGGCGTGATGCCCGCAAAGTGTTCGACGGAATGTCTCTGAGAACTGTGGATAGT CTATTTACAAGTGAACTGCTATCAGAAAAAGTTGCTAGTTGCGTATATGGTAGACTTAACATGGGTTCAGGAAACAACAGTGTAAAGAAGGTATTTGAGG AAATGCCAACAAAAGATATTATCTCGTGGAATACTGTCATCGCAGGAAATGGACAAAACGGTATGCATGAAGAAGCTTTAGAAATGCTTAAGGAAATGGG AAATGTCGGGCTGAAACCTGACATTTTTACTCTGTCAGCCGTACTTCCCATCTTTGCTGAATACGTGGATGTTGCTAAGGGAAAAGCGATTCATGGGTAT GCCATAAGATATGGCTTTGACAAAGACTTGTATATAGTCAGCGGCTTAATCAATATGTATTCACGGTGTGCTCGAGTGAAAGATTCGATCCAGGTGTTTA ATATTTCGCCTCGACGAGACAGCATTAGCTGGAACTCAATTATTGCCGGCTGTGTGCAGAATGGTCTCTTTGACGAAGGTTTGATATTCTTTCGACAGAT GTTGACCGACAATATTAGACCCGGGAGCGTTTCATTTTCCAGCATCATGCCTGCTTGTGCTCACTTGACCACATTGAATTTGGGAAAGCAACTCCATGGA TATATTCTCAGGTGTGGGTTTGACGACAATATATTTATTGCTAGTTCGTTGGTGGATATGTATGCCAAATGTGGTCATATTAGGATAGCGAAATGGATTT TTGAAGGCATCAAAAGCCATGATATGGTCTCTTGGACAGCCATGATAATGGGTTGTGCTTTGCACGGTAATGCTCAAGATGCCATTTCATTGTTTGATCA GATGGAATTCGAAGGAGTGCGGCCAAATTATGTGGCTTTCACGGCTATCATAACTGCTTGCAGTCATGGTGGCTTGTTAGATGAAGGTCAAAGATACTTT GATAGTATGACTCAGAAATACGGTATTAAGCCGGGTATGGAACACTATGCTGCCATGGCAGACCTTCTTGGTCGAAAGGGAAAACTGACCGAAGCTTATG AATTGATCAGTAGCATGAGCGATCCAGCTGGTAGTGTTTGGTCCTTGCTACTTTCAGCTTGTAGAGTCCACAAAGACGTTCACTTGGCCGAAAAGGTTGC AGAGAGAATATTTGAGCTTGATCCAGAAAATATCGGGGCTCGTGTTCTTATGTCTAATATTTACGCGAGTGCTTGCAGATGGAAGGACGCAGCAAAGGTG CGAATGGGGATAAAGAAAAGTCCGGCATGTAGTTGGATTGAAGTGAAGAATAAGATGCATACTTTTATTGCGAACGATATGTCGCATCCCGATTGTGATA AGATAGAAGAAGCTCTGGGCGAACTGCTTGAGAAAATGGAGCAAGTAGGGTATGTTCCTGACACAAGTGAGGTGTCTTATGATGTTGATGATGAGCAAAA GAAATACTTGCTATATGGTCATAGTGAGAGACTGGCCATAGCATTTGGGATCATAAGCACCCCTGCTGGGACAACGATTCGAGTTACCAAGAACATCCGG GCTTCAGAATCACCAGGTGACTATATTGGGGATGTTTCGAGCAAGCTGCTCTACACTTCAAACAGATGGTGCATTCAGGGTGTAAAATCAGAGGAAGTTG TCTTTTTTGCTGTGTTAACTGCTGTCTCTAGGGTTGAGCTTTCAGTGGCAAAGGAGCATAACATGATCACAAATTCATTCTCATTCCTCTACCCTTCCAA TATCCCTCCATTCCCACAACACATACCAAAGAAAATGGGGAGTTCAGCAATGCCTGCTATGATCTTTGCTTGCTGCATTCTTTGGTCGTTCCCAAGTTTC ACTTCTGCTATCACCAGGCATTACAAATTCAATATCGGTTACACGAACATCACAAGGCTGTGCCACACGAGGAACGTGATCACAGTCAACGGCCAACTCC CCGGACCTCGCCTCATTGCGAGGGAAGGCGATCAAGTCATCGTTAAAGTCGTTAATAATGTGTCTAACAACATCACCATTCATTGGCATGGGATCAGGCA GCTGACCACCGGCTGGGCTGATGGACCGTCTTACATAACACAATGTCCGATACAAACCGGTCAATCTTACATTTACAACTTCACGATCACTGGACAAAGA GGCACACTTTGGTACCATGCACATCTCTCGTGGCTAAGGTCCTCCGTTTACGGACCGATCGTGATCCTCCCGAAGAAAAACGAATCCTACCCTTTCCAGA AGCCTTACAAACAAGTTCCCATACTTTTCGGAGAATGGTTCAATGTGGATCCTGAAGCTATAATTGCGCAAGCTCTTCAGACTGGCGGCGGTCCGAATGT CTCGGACGCTTACACCATTAATGGTTTTCCTGGTCCATTGTACAATTGCTCTGCTTCAGATACATACAAGCTGAAAGTAAAGCCAGGAAAAACGTACCTT CTGAGGCTAACCAACGCTGCACTCAACGATGAGCTCTTCTTCGGAATCGCAAACCATTCTCTCACCGTAGTGGATGCTGACGCCATTTATGTCAAGCCTT TCGAAACAGAGTGGCTCATCCTAACTCCAGGACAAACCACGAACGTCCTTCTGAAAACAAAACCCCATTCCCCAAACGCCACTTTCCTCATGGAAGCTAG GCCTTACTTCACCGGAGCAGGAACCTTCGACAACTCCACCGTTGCCGGAATCCTCGAATACGCTTCTTCCACAACTACAAAGAAGAAAAACCTCCTCCCT TCGGTTAAGCCCAATCTTCCTTCCATCAACGGCAACATAAGCACCCCTCAGGTTGCCAATTTTACCGCCAAATTCCGCAGTCTGGCCAGCCAGAAATTCC CAGCGAACGTCCCGCAAACGGTGAACCGGAAGTTCTTCTTCACGGTGGGGCTGGGGACGACTCCGTGTCCCGCGAACACGACGTGCCAGGGTCCTACGAA CACGACGAAATTCGCGGCATCGATCAACAACGTTTCGTTTGCTCTGCCGACGGTGGCGCTCTTGCAGTCGTACTATTCGGGGAATTCGATTGGGGTTTTC AGTTCCGATTTCCCTCAGAACCCGGCCAACCCGTTCAATTACACGGGGACGCCTCCGAACAATACAAATGTATCAAACGGGACCAAGGCGGTGGCGCTGG CGTTCAATACGAGCGTGGAGGTGGTGCTGCAGGACACGAGCATTCTCGGAGCGGAAAGCCACCCGCTTCATTTGCACGGGTACAACTTCTTCGTGGTGGG GACCGGGTTCGGGAACTATAACCCGAGTAAGGACCCGGCCAAGTTTAATTTGGTGGATCCGGTGGAAAGGAACACGGTGGGTGTGCCTGCTGGTGGGTGG GTGGCGATGCGGTTCCTTGCCGATAACCCAGGGATGTGGTTTATGCACTGTCATCTGGATGTTCATACTAGCTGGGGACTGAGGATGGCTTGGGTGGTGT CGGACGGAGCGCTGCCGAGTCAGAAGCTGCAGCCGCCGCCGGCGGATCTTCCACAGTGTTAG
AA sequence Show only first row Show all	>Lus10010850 pacid=23163444 polypeptide=Lus10010850 locus=Lus10010850.g ID=Lus10010850.BGIv1.0 annot-version=v1.0 MAATVEVLGAVLRKPESISTKIQVKQLLKSLLNRPGAITTKSEAKQLHAQILKFNPSSPVYISAAICVYSNFSLLKESLILFDSLQFPPSLAYKSIVRCY AVNGLFVESLSSFIEMRASGKNPDHTVFPSVLKACTFLSDMKLGEALHGCIIRVGMDIHLTTGNALLNMYAKLQSLAEIEWRRRDARKVFDGMSLRTVDS LFTSELLSEKVASCVYGRLNMGSGNNSVKKVFEEMPTKDIISWNTVIAGNGQNGMHEEALEMLKEMGNVGLKPDIFTLSAVLPIFAEYVDVAKGKAIHGY AIRYGFDKDLYIVSGLINMYSRCARVKDSIQVFNISPRRDSISWNSIIAGCVQNGLFDEGLIFFRQMLTDNIRPGSVSFSSIMPACAHLTTLNLGKQLHG YILRCGFDDNIFIASSLVDMYAKCGHIRIAKWIFEGIKSHDMVSWTAMIMGCALHGNAQDAISLFDQMEFEGVRPNYVAFTAIITACSHGGLLDEGQRYF DSMTQKYGIKPGMEHYAAMADLLGRKGKLTEAYELISSMSDPAGSVWSLLLSACRVHKDVHLAEKVAERIFELDPENIGARVLMSNIYASACRWKDAAKV RMGIKKSPACSWIEVKNKMHTFIANDMSHPDCDKIEEALGELLEKMEQVGYVPDTSEVSYDVDDEQKKYLLYGHSERLAIAFGIISTPAGTTIRVTKNIR ASESPGDYIGDVSSKLLYTSNRWCIQGVKSEEVVFFAVLTAVSRVELSVAKEHNMITNSFSFLYPSNIPPFPQHIPKKMGSSAMPAMIFACCILWSFPSF TSAITRHYKFNIGYTNITRLCHTRNVITVNGQLPGPRLIAREGDQVIVKVVNNVSNNITIHWHGIRQLTTGWADGPSYITQCPIQTGQSYIYNFTITGQR GTLWYHAHLSWLRSSVYGPIVILPKKNESYPFQKPYKQVPILFGEWFNVDPEAIIAQALQTGGGPNVSDAYTINGFPGPLYNCSASDTYKLKVKPGKTYL LRLTNAALNDELFFGIANHSLTVVDADAIYVKPFETEWLILTPGQTTNVLLKTKPHSPNATFLMEARPYFTGAGTFDNSTVAGILEYASSTTTKKKNLLP SVKPNLPSINGNISTPQVANFTAKFRSLASQKFPANVPQTVNRKFFFTVGLGTTPCPANTTCQGPTNTTKFAASINNVSFALPTVALLQSYYSGNSIGVF SSDFPQNPANPFNYTGTPPNNTNVSNGTKAVALAFNTSVEVVLQDTSILGAESHPLHLHGYNFFVVGTGFGNYNPSKDPAKFNLVDPVERNTVGVPAGGW VAMRFLADNPGMWFMHCHLDVHTSWGLRMAWVVSDGALPSQKLQPPPADLPQC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10010850 [exp]	0	1
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10024378 [exp]	1.4	0.9765
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10027782 [exp]	2.6	0.9844
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10017175 [exp]	3.5	0.9758
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032593 [exp]	10.5	0.9709
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10035517 [exp]	10.8	0.9722
AT5G26330			Cupredoxin superfamily protein...		Lus10021925 [exp]	11.7	0.9708
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10015576 [exp]	12.3	0.9669
AT3G51325			RING/U-box superfamily protein...		Lus10018292 [exp]	13.5	0.9679
AT4G13930		SHM4	serine hydroxymethyltransferas...		Lus10032592 [exp]	14.1	0.9611
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031142 [exp]	18.4	0.9622

Compare expression of checked genes

Lus10010850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.