Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02180 474 / 5e-161 Transmembrane amino acid transporter family protein (.1) AT5G02170 469 / 3e-159 Transmembrane amino acid transporter family protein (.1.2) AT3G09340 450 / 4e-152 Transmembrane amino acid transporter family protein (.1) AT3G09330 447 / 9e-151 Transmembrane amino acid transporter family protein (.1) AT2G39130 444 / 2e-149 Transmembrane amino acid transporter family protein (.1) AT3G54830 395 / 2e-130 Transmembrane amino acid transporter family protein (.1) AT2G41190 356 / 3e-115 Transmembrane amino acid transporter family protein (.1) AT3G28960 255 / 2e-78 Transmembrane amino acid transporter family protein (.1) AT5G15240 252 / 8e-77 Transmembrane amino acid transporter family protein (.1.2) AT5G02190 241 / 2e-72 EMB24, ATASP38, PCS1 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024374 [exp] 702 / 0 AT5G02180 446 / 4e-152 Transmembrane amino acid transporter family protein (.1) Lus10039190 [exp] 437 / 3e-146 AT2G39130 652 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10024375 [exp] 372 / 6e-123 AT5G02190 572 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Lus10003817 [exp] 331 / 6e-105 AT2G41190 615 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10010457 [exp] 327 / 1e-96 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10012824 [exp] 282 / 2e-88 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10038702 [exp] 281 / 7e-88 AT2G39130 556 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10005239 [exp] 277 / 2e-86 AT5G15240 509 / 4e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10030469 [exp] 273 / 1e-84 AT5G15240 405 / 4e-139 Transmembrane amino acid transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G100300 [exp] 558 / 0 AT5G02180 587 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G226000 [exp] 446 / 4e-150 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 433 / 5e-145 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.006G087600 [exp] 305 / 8e-97 AT5G02190 548 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Potri.010G169000 [exp] 296 / 8e-94 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.008G086500 [exp] 287 / 2e-90 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.006G038700 [exp] 272 / 2e-84 AT2G41190 459 / 9e-159 Transmembrane amino acid transporter family protein (.1) Potri.017G083500 [exp] 270 / 1e-83 AT5G15240 448 / 4e-156 Transmembrane amino acid transporter family protein (.1.2) Potri.017G083700 [exp] 264 / 2e-81 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.018G099700 [exp] 242 / 1e-73 AT3G28960 348 / 6e-118 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10010855 pacid=23163424 polypeptide=Lus10010855 locus=Lus10010855.g ID=Lus10010855.BGIv1.0 annot-version=v1.0 ATGGAGGAATCCACAACTCCAGCGTGGCCTCAGAGTTACAGGGCGTCAATGGACATGCTAACGAATGTCGCCGAAGGGTTGTTGCCTTCTTCGGTTTCAG CGAATCCTGAATCGGATTCTCTCCTCACAGCGCCTCTTATCCGGAAAAGGAATTTGGGGAAAGATGTGGTTTGTTCTTCACCATTATCTCCACATGGCCA AACTTCGGTCTCTCCACATTTGCAAATTGTGGCTGATGAAGAGAATAAGCAGAGTTCATATGCACAAGCAGTCCTTAATGGAATCAATATATTATGTGGG ATAGGGCTGCTTACTACTCCATATGCAGTGAAGGAAGGAGGGTGGCTTAGCCTCTTAATCCTATTCCTATTTGGAGTCCTCAGTTGCTACACAGGAACTT TGTTGAAGGAATGTTTAGAAAGCTCTCCCGGTTTGCAAACTTATCCCGATATAGCTCAGGCTGCTTTCGGTGTATCGGGTCGATTATTAGTATCTATACT TCTGTACTTTGAATTATACGCAGCTTGTGTGGAGTATGTTATCATGACGAGTGATAACTTATCGACATTGTTCCCAAACACAACCATGGATTTCGGTGGA ATGCATCTCGAGTCTCACGTAATCTTCCCTGTCATCACAGTGCTTATTGTCATGCTCACTATTTGGCCTCAAGACATTAGCCTGTTGTCGTACCTTTCAG TTGGCGGAGTAGGTGCATCCATCCTACTATCCGGTTGCTTGTTGTGGACTGGGATTTTCGATGATGTCGGATTGCATTCAAGCGGGACAGCTCTTGACCT TGGAAACCTACCTTTTGCAATCGGTATATACGGGTTTTGCTTCTCCGGCCATGCTGTTTTCCCAAACATTTACTACTCCATGAAGGAACCTTCAAGGTTC CCTTCGGTTTTGATCATCAGCTTCGTTTTCTGCTGGTTCATGTACACCGGAGTAGCGATTTGCGGGTTTCTCTTCTTTGGAGAAACGGTGAAATCACAGT TTACTCTTAGCATGCCTGCAGAATTTGCAGCGTCGAAAATTGCAGTCTGGACTGCAGTTGTGAACCCAATCACGAAATACGCGCTGACCATGATGCCAGT AGCGTTGAGCTTAGAAGAACTCATCCCATCTGGGAGGTTTAGATCTTATTCTGTATCACTTGGAATCAGAATAGTTTTAGTACTTTCGACTTTATTCGTG GCTCTGGCGATTCCATTATTTGGTTCTGTGATGGCATTTTGTGGCTCTTTTCTTTCCATGCTTCTCGCTATCATTGTTCCTTGCGCTTGTTATATCAGTG TATTTCATGACAGATTGAGCAGGGTGCAGCTGGCGGCTTGCATCTTTTCCATACTTGTAGGGGTGCAACAGGGGATCATCCTGCCGCTCCAAACCCGGGA AGTCCCGTCCGGATCCCTTCCTCGACCCGCCAGTAAGCTCCCCTTTCGCCACAATGTCAGCCTCACCGTCACTCTTAGCGTCGGCACTCCGCCTCAGAAT GTCTCGATGGTGATCGACACCGGAAGCGAACTCTCCTGGCTCCGCTGCAACAGGACCCAACCAGCGTACCCGACTTCGTTCGACCCGTTTAACTCCACTT CTTACCGACCCGTACCTTGTTCTTCCCCAACCTGCACCGCTCGCACCCACGACTTTCCTATCCCGGCATCCTGCGATTCCGGCAACCTCTGCCACGCCAC GCTCTCCTACGCCGACGCCTCCTCGTCGGAAGGTAACCTCGCCACCGACATTTTCCGGATCGGAAGCTCCGACCTCTCGGGTCTGATTTTCGGGTGTATG GATTCGGTTTCCAGCTCCAACTCGGAAGAAGATTCTCGAAACACAGGGCTAATGGGGATGAATCGCGGATCACTCTCGTTCGTCTCGCAGATGGGATTCC CGAAATTCTCGTATTGCATCTCCGGCAGCGACTTCTCCGGAATACTCCTCCTCGGGGAAGAGAAGCAAAGTACGCCGGATTGCTTCCGTTAA
AA sequence Show only first row Show all	>Lus10010855 pacid=23163424 polypeptide=Lus10010855 locus=Lus10010855.g ID=Lus10010855.BGIv1.0 annot-version=v1.0 MEESTTPAWPQSYRASMDMLTNVAEGLLPSSVSANPESDSLLTAPLIRKRNLGKDVVCSSPLSPHGQTSVSPHLQIVADEENKQSSYAQAVLNGINILCG IGLLTTPYAVKEGGWLSLLILFLFGVLSCYTGTLLKECLESSPGLQTYPDIAQAAFGVSGRLLVSILLYFELYAACVEYVIMTSDNLSTLFPNTTMDFGG MHLESHVIFPVITVLIVMLTIWPQDISLLSYLSVGGVGASILLSGCLLWTGIFDDVGLHSSGTALDLGNLPFAIGIYGFCFSGHAVFPNIYYSMKEPSRF PSVLIISFVFCWFMYTGVAICGFLFFGETVKSQFTLSMPAEFAASKIAVWTAVVNPITKYALTMMPVALSLEELIPSGRFRSYSVSLGIRIVLVLSTLFV ALAIPLFGSVMAFCGSFLSMLLAIIVPCACYISVFHDRLSRVQLAACIFSILVGVQQGIILPLQTREVPSGSLPRPASKLPFRHNVSLTVTLSVGTPPQN VSMVIDTGSELSWLRCNRTQPAYPTSFDPFNSTSYRPVPCSSPTCTARTHDFPIPASCDSGNLCHATLSYADASSSEGNLATDIFRIGSSDLSGLIFGCM DSVSSSNSEEDSRNTGLMGMNRGSLSFVSQMGFPKFSYCISGSDFSGILLLGEEKQSTPDCFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02170			Transmembrane amino acid trans...		Lus10010855 [exp]	0	1
AT4G31040			CemA-like proton extrusion pro...		Lus10021616 [exp]	2.2	0.9054
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10028990 [exp]	3.2	0.8992
AT2G15890		MEE14	maternal effect embryo arrest ...		Lus10012044 [exp]	3.5	0.8920
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	6.3	0.8749
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Lus10021544 [exp]	6.6	0.8786
AT1G08860		BON3	BONZAI 3, Calcium-dependent ph...		Lus10033826 [exp]	7.9	0.8010
AT3G07310			Protein of unknown function (D...		Lus10038208 [exp]	8.4	0.8479
AT4G31040			CemA-like proton extrusion pro...		Lus10040575 [exp]	8.5	0.8520
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Lus10014067 [exp]	13.1	0.8455
AT2G46090			Diacylglycerol kinase family p...		Lus10036388 [exp]	14.8	0.8352

Compare expression of checked genes

Lus10010855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.