Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39730 636 / 0 RCA rubisco activase (.1.2.3) AT1G73110 322 / 7e-107 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G43010 49 / 4e-06 RPT4A regulatory particle triple-A ATPase 4A (.1) AT2G03670 47 / 2e-05 CDC48B cell division cycle 48B (.1) AT1G45000 47 / 2e-05 AAA-type ATPase family protein (.1.2) AT2G26140 42 / 0.0006 FTSH4 FTSH protease 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003234 [exp] 690 / 0 AT2G39730 757 / 0.0 rubisco activase (.1.2.3) Lus10004708 [exp] 643 / 0 AT2G39730 733 / 0.0 rubisco activase (.1.2.3) Lus10002710 [exp] 642 / 0 AT2G39730 787 / 0.0 rubisco activase (.1.2.3) Lus10040275 [exp] 642 / 0 AT2G39730 730 / 0.0 rubisco activase (.1.2.3) Lus10000518 [exp] 640 / 0 AT2G39730 790 / 0.0 rubisco activase (.1.2.3) Lus10041627 [exp] 331 / 5e-110 AT1G73110 639 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035616 [exp] 300 / 4e-100 AT2G39730 362 / 5e-124 rubisco activase (.1.2.3) Lus10018033 [exp] 49 / 5e-06 AT2G03670 813 / 0.0 cell division cycle 48B (.1) Lus10017972 [exp] 47 / 3e-05 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G101100 [exp] 659 / 0 AT2G39730 696 / 0.0 rubisco activase (.1.2.3) Potri.010G200500 [exp] 657 / 0 AT2G39730 797 / 0.0 rubisco activase (.1.2.3) Potri.008G058500 [exp] 655 / 0 AT2G39730 803 / 0.0 rubisco activase (.1.2.3) Potri.001G037300 [exp] 335 / 8e-112 AT1G73110 663 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G128700 [exp] 47 / 2e-05 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.003G187601 [exp] 43 / 2e-05 AT1G73110 78 / 3e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G231700 [exp] 47 / 3e-05 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Potri.004G158600 [exp] 46 / 3e-05 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Potri.009G120500 [exp] 46 / 3e-05 AT1G45000 744 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G031400 [exp] 46 / 3e-05 AT1G45000 745 / 0.0 AAA-type ATPase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10010868 pacid=23163441 polypeptide=Lus10010868 locus=Lus10010868.g ID=Lus10010868.BGIv1.0 annot-version=v1.0 ATGGCTACTATACATTCACTGTCATCCCTCGGATCTAACGCTTGGCATCAGTTGAGCTCGAACAACAACAATGGATCAGCCGCACCACCTTCGGCAATAC CAAGCTCCAGAGTGAAGAAGACGAAGAACAACCTTAATAACCTCAAGTTCAAAGTTTCAGCAGAGTACGATTATGATGAGAAGAAGAAGAAGCAGACGGG GAAAGCAGACAGATGGAAAGGATTAGTTACAGACACATCAGACGACCAACAGGACATCACCAGAGGGAAAGGAATGGTGGATTCCCTCTTCCAAGCTCCC ATGGGTACCGGGACCCACCACGCCGTCATGTCTTCCTACGATTACGTCAGCCACGGCCATCGCCAGTTTGACTTGGATAACAGCATTGATGGGCTCTACA TTGCTCCCGCGTTTATGGACAAGCTGGTTGTTCATATTGCCAAGAGCTTCCTCTCCCTTCCTAACATTAAGGTTCCATTGATATTGGGTATCTGGGGAGG CAAAGGACAAGGGAAAACATTCCAATGTGAGCTCGTCTTCAGAAAAATGGGAATCAACCCAATTATGATGAGCGCGGGAGAATTGGAAAGCGGCAATGCC GGGGAGCCAGCGAAGCTGATCAGACAGAGATACAGAGAAGCATCGGACATAATCAGAAAAGGCCACATGTGCTGTCTATTCATCAACGATCTCGACGCCG GCGCGGGAAGGCTAGGTGGAACGACTCAGTACACGGTCAACAACCAGATGGTGAACGCTACTCTGATGAACATTGCTGATAATCCGACCAACGTACAGCT TCCGGGGCAGTACAACAAGCAAGAGAACCCGCGGGTCCCAATCATCGTGACCGGAAACGACTTCTCCACATTGTATGCACCTTTGATTCGCGACGGGCGT ATGGAGAAGTTCTATTGGGCGCCTACTAGGGACGACAGGATTGGCGTGTGCAACGGGATCTTCCTAGCAGATAATATCCCTTTGGATCATATCATTAAGC TCGTCGACACGTTTCAGGGCCAGTCTATTGATTTCTTCGGGGCTGTGAGGGCTAGGGTGTACGATGATGAAGTGAAGGAGTGGGTGAGGGGAATTGGAGT GGAGAATGTCGGGAAGAGACTTGTGAATTCGAAACAAGGGCTACCGAGTTTGGAGCAGCCGGAGATGACATTGAGGAAGCTGATTGAGTATGGGCATATG CTGGTGAAGGAGCAGGAAAATGTGAAGAGAGTCCGGTTGGCTGACAAGTATTTGAAAGAAGCTGCTCTTGGCGATGCTAATCAGGATTAA
AA sequence Show only first row Show all	>Lus10010868 pacid=23163441 polypeptide=Lus10010868 locus=Lus10010868.g ID=Lus10010868.BGIv1.0 annot-version=v1.0 MATIHSLSSLGSNAWHQLSSNNNNGSAAPPSAIPSSRVKKTKNNLNNLKFKVSAEYDYDEKKKKQTGKADRWKGLVTDTSDDQQDITRGKGMVDSLFQAP MGTGTHHAVMSSYDYVSHGHRQFDLDNSIDGLYIAPAFMDKLVVHIAKSFLSLPNIKVPLILGIWGGKGQGKTFQCELVFRKMGINPIMMSAGELESGNA GEPAKLIRQRYREASDIIRKGHMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGQYNKQENPRVPIIVTGNDFSTLYAPLIRDGR MEKFYWAPTRDDRIGVCNGIFLADNIPLDHIIKLVDTFQGQSIDFFGAVRARVYDDEVKEWVRGIGVENVGKRLVNSKQGLPSLEQPEMTLRKLIEYGHM LVKEQENVKRVRLADKYLKEAALGDANQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10010868 [exp]	0	1
AT5G14500			aldose 1-epimerase family prot...		Lus10032084 [exp]	3.9	0.8229
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10012257 [exp]	4.0	0.8293
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10029506 [exp]	4.9	0.8375
AT5G67130			PLC-like phosphodiesterases su...		Lus10009368 [exp]	6.1	0.8525
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10041959 [exp]	8.8	0.8317
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10028287 [exp]	11.2	0.8135
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10040199 [exp]	12.4	0.7894
AT1G21070			Nucleotide-sugar transporter f...		Lus10035824 [exp]	15.3	0.8136
AT1G21070			Nucleotide-sugar transporter f...		Lus10036606 [exp]	18.5	0.8091
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10000553 [exp]	21.9	0.7815

Compare expression of checked genes

Lus10010868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.