Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29350 278 / 3e-94 SAG13 senescence-associated gene 13 (.1.2.3) AT5G06060 273 / 3e-92 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29330 268 / 1e-90 TRI tropinone reductase (.1) AT2G29360 268 / 3e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 266 / 1e-89 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29150 265 / 3e-89 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 263 / 1e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G30670 263 / 2e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29260 265 / 3e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29300 258 / 1e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040737 [exp] 287 / 6e-98 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3) Lus10040736 [exp] 279 / 1e-94 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004984 [exp] 276 / 2e-93 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010874 [exp] 271 / 2e-91 AT5G06060 295 / 8e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024360 [exp] 268 / 2e-90 AT5G06060 287 / 7e-98 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024359 [exp] 267 / 6e-90 AT2G29360 314 / 2e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 266 / 3e-89 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10001560 [exp] 266 / 9e-88 AT5G06060 350 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 261 / 1e-87 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G089700 [exp] 321 / 4e-111 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 290 / 1e-98 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 281 / 2e-95 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G059100 [exp] 275 / 6e-93 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 269 / 8e-91 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 268 / 2e-90 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 261 / 8e-88 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G142600 [exp] 254 / 5e-85 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G244900 [exp] 256 / 8e-85 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 250 / 1e-83 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10010873 pacid=23163451 polypeptide=Lus10010873 locus=Lus10010873.g ID=Lus10010873.BGIv1.0 annot-version=v1.0 ATGGGAGAAAGCAGATGGTCTTTAGCCGGGATGACTGCTCTTGTCACCGGAGGAACAAGAGGCATTGGATATCAGATTGTCGAAGAGCTTGCAGGACTTG GGGCGAGGGTACACACGTGTTCCCGCAACGGGCAGGAGCTGAACGACCGGGTACGTGAATGGAAGGGGAAAGGGTTTCAAGTCAGCGGCTCTGTTTGTGA CATGAGCTTGAGGTCCGACAGACTGATGCTCATGGAGACGGTTGATTCACTGTATGATGGGAAGCTCAACATCCTCGTGAATAATGCTGCCACAATCGTG ATGAAAAGTTGCGTGGATCATATCGAGGAGGATTACGCTAGCGTGCTGGGTACCAATTTGGAGTCACCGTACCATTTGTGTCAACTGGGACATCCTTTGT TGAAAGCATCGAGAAATGGAATTATTATATTCATCTCCTCGATCTCTGGGTTGGTGTCCATGCCAATGACATCACTCTATGCAGCCTCCAAAGGGGCAAT TAACCAACTGACAAGGAGTTTGGCATGCGAGTGGGCAAAGGATAACATTCGAACGAATACGGTGGCTCCTGGTGGGGTCAGAACTTCCTTTGCGAAACCG GATGATGATCAGGTGTTGAAAGAGTATGAAGGGTTTGTAAGGCAGATGCCGATTAAGCGCGTGGCGGAGCCGGAAGAGGTGTCGGCGGTGGTGGCTTTCT TGTGCATGCCGGGTGCTTCTTACGTGAACGGACAGGTGATTGCGGTGGATGGTGGATTCTCAGTTAATGGCTGCTAG
AA sequence Show only first row Show all	>Lus10010873 pacid=23163451 polypeptide=Lus10010873 locus=Lus10010873.g ID=Lus10010873.BGIv1.0 annot-version=v1.0 MGESRWSLAGMTALVTGGTRGIGYQIVEELAGLGARVHTCSRNGQELNDRVREWKGKGFQVSGSVCDMSLRSDRLMLMETVDSLYDGKLNILVNNAATIV MKSCVDHIEEDYASVLGTNLESPYHLCQLGHPLLKASRNGIIIFISSISGLVSMPMTSLYAASKGAINQLTRSLACEWAKDNIRTNTVAPGGVRTSFAKP DDDQVLKEYEGFVRQMPIKRVAEPEEVSAVVAFLCMPGASYVNGQVIAVDGGFSVNGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10010873 [exp]	0	1
AT1G61105			Toll-Interleukin-Resistance (T...		Lus10011216 [exp]	1.0	0.9811
AT2G43870			Pectin lyase-like superfamily ...		Lus10011417 [exp]	5.1	0.9701
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008843 [exp]	6.0	0.8652
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004856 [exp]	6.2	0.9701
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10012991 [exp]	7.2	0.9701
AT2G39040			Peroxidase superfamily protein...		Lus10021957 [exp]	7.5	0.7622
AT2G03360			Glycosyltransferase family 61 ...		Lus10037124 [exp]	7.9	0.7532
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10014056 [exp]	8.1	0.9701
					Lus10039432 [exp]	8.8	0.9701
					Lus10002332 [exp]	9.5	0.9701

Compare expression of checked genes

Lus10010873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.