Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29150 274 / 1e-92 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 273 / 2e-92 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G06060 273 / 2e-92 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 270 / 9e-91 SAG13 senescence-associated gene 13 (.1.2.3) AT2G29360 269 / 2e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 268 / 2e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29260 270 / 5e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29310 260 / 3e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G30670 259 / 1e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29370 259 / 2e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024360 [exp] 433 / 3e-155 AT5G06060 287 / 7e-98 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024359 [exp] 411 / 2e-146 AT2G29360 314 / 2e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010873 [exp] 275 / 6e-93 AT5G06060 308 / 2e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004984 [exp] 274 / 2e-92 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 271 / 2e-91 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040737 [exp] 263 / 2e-88 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3) Lus10004985 [exp] 262 / 2e-86 AT2G29340 322 / 5e-110 NAD-dependent epimerase/dehydratase family protein (.1.2.3) Lus10040271 [exp] 254 / 8e-85 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 252 / 9e-84 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G245000 [exp] 291 / 2e-99 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 284 / 2e-96 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 278 / 3e-94 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G059100 [exp] 276 / 2e-93 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 274 / 1e-92 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G142600 [exp] 272 / 6e-92 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G039500 [exp] 272 / 9e-92 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 271 / 3e-91 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 264 / 1e-87 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 244 / 3e-81 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10010874 pacid=23163456 polypeptide=Lus10010874 locus=Lus10010874.g ID=Lus10010874.BGIv1.0 annot-version=v1.0 ATGGCTACTACCGACTTAATCAGCAGCAGACATCAACGGTGGTCTCTTGAGGGAATGACTGCTCTTGTTACCGGTGGAACTCGAGGCATTGGCCATGCCA TTGTAGAGGAGTTAGCAGAGTTGGGGGTTACAGTCCACACTTGTGCTCGCACCCAGACCGACATTGACCGATGTTTGGCAGAATGGCAGATCAAAGGCTA CAAAGTCACTGCCTCAGCCTGCGACGTCCTGTTTCGACACCAACGCCAGAAGCTTATAGAAAATGTCTCCTCAGCCTTTGATGGAAAGCTCAACATTCTC GTGAACAACAGTGGCATCACACTCCCTAAAGAAGTGGTAGACTTCACCGAGGAGGACATGACCGCGGTGATGGGCACTAATTTCGAGTCGGCTTATCATC TCTCCCAACTCTCACATCCCCTGCTGAAAGCATCAGGAAATGGAAACATCATTAACATATCTTCCATTGCCAGCTTTGTTCACATCCCTCTGACTGCTCT GTATTCATCATCTAAAGGAGCAATGAATCAGATGACAAGGAGCTTGGCCTGTGAGTGGGCAAAGGACAACATTAGGGTCAATGCAATTGCTCCAGGGTTG ATCCAGACAAAAATGGTGGAAGCCGGAGAGGATGTTGTGGGAGGGCTTGTAGGTATGCTAATTAAGAAAACTCCGATGAAGAGGGCCGGAGAGACGAATG AGGTATCGTCGTGGGTGGCATTTCTTAGCAGCTCTGCTGCTTCTTATACGACGGGTCAAGTTATGGTCGTAGACGGAGGCTTTACGGTCAATGCCTCTCC TTTCTAG
AA sequence Show only first row Show all	>Lus10010874 pacid=23163456 polypeptide=Lus10010874 locus=Lus10010874.g ID=Lus10010874.BGIv1.0 annot-version=v1.0 MATTDLISSRHQRWSLEGMTALVTGGTRGIGHAIVEELAELGVTVHTCARTQTDIDRCLAEWQIKGYKVTASACDVLFRHQRQKLIENVSSAFDGKLNIL VNNSGITLPKEVVDFTEEDMTAVMGTNFESAYHLSQLSHPLLKASGNGNIINISSIASFVHIPLTALYSSSKGAMNQMTRSLACEWAKDNIRVNAIAPGL IQTKMVEAGEDVVGGLVGMLIKKTPMKRAGETNEVSSWVAFLSSSAASYTTGQVMVVDGGFTVNASPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10010874 [exp]	0	1
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10019989 [exp]	6.4	0.8975
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10024360 [exp]	7.6	0.8530
AT1G11655			unknown protein		Lus10002065 [exp]	7.9	0.8922
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10002001 [exp]	8.5	0.8959
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033336 [exp]	12.0	0.8822
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10029453 [exp]	12.4	0.8657
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10027164 [exp]	13.9	0.8619
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10007344 [exp]	15.2	0.8602
AT1G78780			pathogenesis-related family pr...		Lus10018919 [exp]	16.0	0.8634
AT1G78780			pathogenesis-related family pr...		Lus10028620 [exp]	16.1	0.8474

Compare expression of checked genes

Lus10010874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.