Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06060 146 / 1e-42 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 145 / 5e-42 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29150 145 / 5e-42 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 142 / 5e-41 SAG13 senescence-associated gene 13 (.1.2.3) AT2G29320 141 / 1e-40 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07450 141 / 1e-40 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29360 140 / 2e-40 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29260 141 / 4e-40 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29300 138 / 2e-39 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29310 137 / 3e-39 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024358 [exp] 322 / 2e-111 AT2G29350 251 / 1e-83 senescence-associated gene 13 (.1.2.3) Lus10010877 [exp] 209 / 2e-62 AT2G29150 191 / 2e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010873 [exp] 168 / 6e-51 AT5G06060 308 / 2e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010874 [exp] 154 / 1e-45 AT5G06060 295 / 8e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 151 / 3e-44 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 150 / 5e-44 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024359 [exp] 150 / 7e-44 AT2G29360 314 / 2e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 149 / 2e-43 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 146 / 3e-42 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G089700 [exp] 171 / 2e-52 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 160 / 2e-48 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 155 / 6e-46 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G142600 [exp] 154 / 2e-45 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G245000 [exp] 151 / 1e-44 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 147 / 4e-43 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 147 / 6e-43 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G059100 [exp] 146 / 2e-42 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 142 / 4e-40 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 137 / 7e-39 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10010875 pacid=23163429 polypeptide=Lus10010875 locus=Lus10010875.g ID=Lus10010875.BGIv1.0 annot-version=v1.0 ATGAATGCACTTGTGACTGGAGGAAACAGAGGAGTTGGGTATGCAATTGTTGAGGAACTTTGCGGAAAGGGTGCCAGAGTTCACATATGCTGCCGTGGCC AGGAAGACATCGATCGGAGGATTCAAGAACGAAAAGCTAAAGGGTTTCAAGTCAGTGGCTCTGTCTTTGACTTGACTTCCAGTTCCAACCGCCAGAAGCT CATCGATGCGTTATCCTCTGTTTTTCATGGCTCGCTTAATATCCTCGTCAACAATGCTGGAATAACTTTCTATAACAAATTCCTGAACTGGAGCCCTGAA GATTACTCAAACGTGATGACCACAAACCTGGAGGCACCTTTTGACCGAGCTGGCCATACGATCTGGAAGCGTCGTGATAATCTCTTCACGGGAATCAACC AATTGACGAGGAACTTAGCGTTCGAATGGGCCAAAGACAACATCCGAGTTAACACCGTCGCTCCATCTGCAACCAACACCGGGATACTTCCATCCGATAT GGAGGTGGTTACAAAGGACTATGCAGAGGTGTGTAAGAGGATCCCAATCGGTAAATGGCCGAATCTAACGAGGTATCGCCATTGGTCGTGTTTCTCTGTA TGCCTGCCGCCTTTTACATTTCCGGCCAAGTCATTGCCGTCGGTGCTGGACTTACAGTTGCTGTTGCTTAATGCTGTTCGTATAATATCTTGTGTTTATC CGACTGACAGGTTAGTTACTGACGAGACTGTTGAGCTTCCCGTCGAAGGCAGAGGAGACCATTTCAACGAGCTTCAGCCTTTGGTCTTGATGCAAGACGT CGCAGGTTGA
AA sequence Show only first row Show all	>Lus10010875 pacid=23163429 polypeptide=Lus10010875 locus=Lus10010875.g ID=Lus10010875.BGIv1.0 annot-version=v1.0 MNALVTGGNRGVGYAIVEELCGKGARVHICCRGQEDIDRRIQERKAKGFQVSGSVFDLTSSSNRQKLIDALSSVFHGSLNILVNNAGITFYNKFLNWSPE DYSNVMTTNLEAPFDRAGHTIWKRRDNLFTGINQLTRNLAFEWAKDNIRVNTVAPSATNTGILPSDMEVVTKDYAEVCKRIPIGKWPNLTRYRHWSCFSV CLPPFTFPAKSLPSVLDLQLLLLNAVRIISCVYPTDRLVTDETVELPVEGRGDHFNELQPLVLMQDVAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10010875 [exp]	0	1
AT2G32450			Calcium-binding tetratricopept...		Lus10038571 [exp]	1.7	0.7519
AT2G26730			Leucine-rich repeat protein ki...		Lus10032162 [exp]	8.5	0.6363
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007501 [exp]	9.4	0.6881
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10008443 [exp]	11.5	0.6329
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033516 [exp]	12.2	0.7080
					Lus10033211 [exp]	22.8	0.6928
AT1G03670			ankyrin repeat family protein ...		Lus10013878 [exp]	32.2	0.5642
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10034048 [exp]	53.5	0.5878
					Lus10027601 [exp]	62.4	0.5271
AT1G04560			AWPM-19-like family protein (....		Lus10033541 [exp]	119.2	0.4726

Compare expression of checked genes

Lus10010875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.