Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29170 80 / 5e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29360 81 / 8e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 80 / 1e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29370 79 / 3e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 77 / 5e-19 SAG13 senescence-associated gene 13 (.1.2.3) AT5G06060 78 / 8e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29260 77 / 2e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 76 / 3e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G07440 70 / 2e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29340 69 / 7e-16 NAD-dependent epimerase/dehydratase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024359 [exp] 122 / 6e-36 AT2G29360 314 / 2e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010874 [exp] 112 / 3e-32 AT5G06060 295 / 8e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024360 [exp] 99 / 6e-27 AT5G06060 287 / 7e-98 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040737 [exp] 82 / 2e-20 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3) Lus10040731 [exp] 82 / 3e-20 AT5G06060 308 / 5e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 79 / 2e-19 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 79 / 2e-19 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040732 [exp] 76 / 2e-18 AT5G06060 269 / 7e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 76 / 3e-18 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G026100 [exp] 87 / 1e-22 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 87 / 3e-22 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 84 / 4e-21 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 83 / 5e-21 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G039300 [exp] 81 / 3e-20 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 81 / 3e-20 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 80 / 1e-19 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G142600 [exp] 80 / 2e-19 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G244900 [exp] 79 / 8e-19 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G059100 [exp] 75 / 7e-18 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10010876 pacid=23163455 polypeptide=Lus10010876 locus=Lus10010876.g ID=Lus10010876.BGIv1.0 annot-version=v1.0 ATGGCGACAACAGGAAGTATTGATGGCGAGTTAATCAGCAGCAGACATCCACGGTGGGCTCTTGAGGGAATGACTGCTCTCGTCACCGGTGGAACTCGAG GCATTGGGCACGCCATTGTAGAGGAATTAGCAGAGTTGGGGGTTATGATCCACACTTGTGCTCGTACCGCTTCGCAACGACATAAACTCATCGAAAATGT CTCCTCCGCCTTCAATGGGAAGCCCAACATTCTTGTTAGTATCCTTACTACATCGATCTAA
AA sequence Show only first row Show all	>Lus10010876 pacid=23163455 polypeptide=Lus10010876 locus=Lus10010876.g ID=Lus10010876.BGIv1.0 annot-version=v1.0 MATTGSIDGELISSRHPRWALEGMTALVTGGTRGIGHAIVEELAELGVMIHTCARTASQRHKLIENVSSAFNGKPNILVSILTTSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29360			NAD(P)-binding Rossmann-fold s...		Lus10010876 [exp]	0	1
					Lus10035753 [exp]	1.0	0.9156
AT1G02460			Pectin lyase-like superfamily ...		Lus10038059 [exp]	11.3	0.9009
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Lus10021015 [exp]	13.3	0.8471
AT2G02061			Nucleotide-diphospho-sugar tra...		Lus10031903 [exp]	22.4	0.8836
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10005780 [exp]	23.8	0.8328
AT5G06490			RING/U-box superfamily protein...		Lus10008972 [exp]	25.0	0.8844
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10035932 [exp]	25.8	0.8834
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	29.8	0.8803
					Lus10012972 [exp]	32.6	0.8688
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10032726 [exp]	38.4	0.8793

Compare expression of checked genes

Lus10010876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.