Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29150 166 / 2e-46 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 163 / 7e-46 SAG13 senescence-associated gene 13 (.1.2.3) AT2G29290 158 / 1e-43 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29360 157 / 4e-43 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 155 / 2e-42 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29300 153 / 7e-42 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29310 152 / 1e-41 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29260 153 / 4e-41 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29330 151 / 4e-41 TRI tropinone reductase (.1) AT2G29320 151 / 5e-41 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024358 [exp] 266 / 9e-84 AT2G29350 251 / 1e-83 senescence-associated gene 13 (.1.2.3) Lus10010875 [exp] 208 / 1e-61 AT5G06060 146 / 1e-42 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010873 [exp] 183 / 8e-53 AT5G06060 308 / 2e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040737 [exp] 173 / 7e-49 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3) Lus10040735 [exp] 165 / 6e-46 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024359 [exp] 165 / 6e-46 AT2G29360 314 / 2e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010874 [exp] 165 / 6e-46 AT5G06060 295 / 8e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004984 [exp] 160 / 2e-44 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024360 [exp] 159 / 6e-44 AT5G06060 287 / 7e-98 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G089700 [exp] 198 / 4e-58 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G090000 [exp] 202 / 2e-55 AT1G06150 195 / 6e-53 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.013G026100 [exp] 184 / 2e-53 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 179 / 2e-51 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G089800 [exp] 174 / 3e-49 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 171 / 3e-48 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 171 / 3e-48 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G142600 [exp] 170 / 7e-48 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G059100 [exp] 164 / 1e-45 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 162 / 6e-45 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10010877 pacid=23163433 polypeptide=Lus10010877 locus=Lus10010877.g ID=Lus10010877.BGIv1.0 annot-version=v1.0 ATGTTTCCAGGTGATAATTTGGTGGCATTCAGCCACGTCAAGCTACGCAAAGATCAGAACAGTTGTGATTTGAGTTCAATTGTTTCACCTTTTTCTGATC CAACTCCATACATGCTGCCAGTTGAGGAAGTAATACCACTAGAAACTTCTCCAAACGTGAACACCATTAAGAATGAAGGTGTTGTTCAAGTCTCAACATT GAGTGATGATGATATAGACATGGAGGCAGTGGAGAGTAAGCTGTCAGAACTGTCTTCTTTGCTGGAAGCATATCCTCCTCCTGGTGGAAATATCAACACC AATCTTTCTGGGAACATGATGAACTCTCAAGTATCAACCACCAGTATTGGTGACTGTATCTATCAGGATATCGTAGATAGTTTTCTTAATTTTCCAGAGG ACTCTGAGTTTCCAGATCACAATCATGATGAGCTCCTTAACAGCTGGATGCTGGATGCTGCAGTACCTGACTCTTACAGCTATCTACATGATACAGTAGC TTTCTCTAGTGGTCTTGATCTGTCAACCAATTATTCATCTCAAACTCTATATCCATGTAACTCTGGCATCGTCAGCAGTGTTGGCAGTTCACTCCCATTG CCTTGCATTATTATACCTGCAACAGATTCTGTAAATGGAAACGTTGAAACCATGATGGAGTCATTATGCAGCAGTGACCAAAATGACAAGTCAACCAATA AAACGCAGCATCAGAGAGGACAGAAAGCATCATCACTGGCTTCCAACAAGAGAAGATCAAGAGCAAAACCTGGTGGTGGCAATAATCACAAATCAAGACC AAGAGATCGACAACGGATCCAGGACAGAGTCAAAGAGCTCCGGGTGCTTGTCCCAAACGGCGGAAAGTGTAGCATTGACGGGCTCCTGGATAAGACGGTG AAACATATGCTGTACCTGACAAGCGTGACTGATCAGGCTCAGTTACTCAAAATGTGGGTAAACCAAGGCCAGAAGGTGAAACAAAGGACAAGTTTGGATT TCAAGTGTTTTGGTGGTGAACAGAAAGAATGTCCAATACACGTTGAAGATCTAGCACATCCTGGACACTTGCTCATCGAGGTGCTTTGTAATGAGCGAAT TCTGTTCCTAGAAATCGCCCGTGTAATCCGCAGCCTGGAACTGAACATCCTAAAGGGTGTCATAATGCAAAGCAGAGACAACAACAATACATGGGCTCAT TTCGTAGTCGAGGAGTGGCTTCCGAACATCAGAATCCCAGGAGGCAGGGGTTCTGTTGACGGTAGGATCGGCGCCAGCGGGAGTAACCAATTGGGAATGG TACCAAAAAACCAGAGCCACGCTCACACGGCCGCTTGTGTGAAACGAACCGGGTCGGGTCAAGGCTCTGAGCTCGTTGGCGACGTCGTAAAAAGGTCAAT GTTTTTAGGAGCAGCCACCAATGACAGGTTCTCAAAACCTTGGATGTACTACACGTACACGTGGGAAGTCATGCCGAAAAGCCAGAGCCACGGGCACATC ACAACCATGGAAGATGTAGCAGCAGAACCTAACAATACTGGAGAAAGCAGGTGGTCTCTGAAGGGTATGGGTGCACTTGTGGCTGGAGGAAACAGAGGGA GTGGGTACGTAATTGTCGAGGAACTTTGTAGTAAGGGTGCCAGAGTTCACATATGCTGCCGTGGCCAGGAAGATATCGACCGGAGGATTCAAGAATGGAA AACCAAAGAGTTTCAAGTCAGCGGCTCTGTCTGTGACTTGACTTCCAATTCCGACCGCCGGAAGCTTGTCGACGCAGTATCCTCTGTTTTTCATGGATGG CTTAATATCCTCGTGAACAATGCTGGAATAACTTCCTACAACAAATTCCTGAACTGGAGCCCTGAAGATTACTCAAACATGATGACCACAAACCTGGAGG CACCTTTCCATATGTGCCAACTCGCACATCCACTCCTGAAAGCATCCGGAAATGGAAGCGTCGTGTTCGTCTCCTCAGTTGCTGGCTTACATGCTTTCCC TTATCTCGCTGGTTACTCAGCCGCCAAAGCCGGAATCAACCAATTGACCAGGAACTTGGCATTCCTTTGTATGTCTGCCGCCTCTTACATTTCCGGCCAA GTCATCGCCGTTGATGTGGCCTTACTGTTACTGCTGCTTAATGCATTCTATCTACGATCAATGCCTTATGTATAA
AA sequence Show only first row Show all	>Lus10010877 pacid=23163433 polypeptide=Lus10010877 locus=Lus10010877.g ID=Lus10010877.BGIv1.0 annot-version=v1.0 MFPGDNLVAFSHVKLRKDQNSCDLSSIVSPFSDPTPYMLPVEEVIPLETSPNVNTIKNEGVVQVSTLSDDDIDMEAVESKLSELSSLLEAYPPPGGNINT NLSGNMMNSQVSTTSIGDCIYQDIVDSFLNFPEDSEFPDHNHDELLNSWMLDAAVPDSYSYLHDTVAFSSGLDLSTNYSSQTLYPCNSGIVSSVGSSLPL PCIIIPATDSVNGNVETMMESLCSSDQNDKSTNKTQHQRGQKASSLASNKRRSRAKPGGGNNHKSRPRDRQRIQDRVKELRVLVPNGGKCSIDGLLDKTV KHMLYLTSVTDQAQLLKMWVNQGQKVKQRTSLDFKCFGGEQKECPIHVEDLAHPGHLLIEVLCNERILFLEIARVIRSLELNILKGVIMQSRDNNNTWAH FVVEEWLPNIRIPGGRGSVDGRIGASGSNQLGMVPKNQSHAHTAACVKRTGSGQGSELVGDVVKRSMFLGAATNDRFSKPWMYYTYTWEVMPKSQSHGHI TTMEDVAAEPNNTGESRWSLKGMGALVAGGNRGSGYVIVEELCSKGARVHICCRGQEDIDRRIQEWKTKEFQVSGSVCDLTSNSDRRKLVDAVSSVFHGW LNILVNNAGITSYNKFLNWSPEDYSNMMTTNLEAPFHMCQLAHPLLKASGNGSVVFVSSVAGLHAFPYLAGYSAAKAGINQLTRNLAFLCMSAASYISGQ VIAVDVALLLLLLNAFYLRSMPYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29150			NAD(P)-binding Rossmann-fold s...		Lus10010877 [exp]	0	1
AT3G51440			Calcium-dependent phosphotries...		Lus10041827 [exp]	2.8	0.9633
AT1G79700	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041618 [exp]	3.2	0.9495
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033365 [exp]	6.5	0.9567
AT3G53810			Concanavalin A-like lectin pro...		Lus10003224 [exp]	6.7	0.9548
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	7.1	0.9609
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	8.2	0.9565
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10023822 [exp]	8.8	0.9534
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10010153 [exp]	9.4	0.9492
AT4G12010			Disease resistance protein (TI...		Lus10008221 [exp]	12.3	0.9420
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	13.0	0.9545

Compare expression of checked genes

Lus10010877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.