Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26860 1211 / 0 LON1, LON_ARA_ARA lon protease 1 (.1) AT3G05790 1091 / 0 LON4 lon protease 4 (.1) AT3G05780 993 / 0 LON3 lon protease 3 (.1) AT5G47040 365 / 4e-112 LON2 lon protease 2 (.1) AT4G24710 46 / 8e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G16290 45 / 0.0002 EMB2083 embryo defective 2083, AAA-type ATPase family protein (.1) AT5G15250 45 / 0.0003 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT5G19990 44 / 0.0005 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 44 / 0.0005 RPT6A AAA-type ATPase family protein (.1) AT3G27120 44 / 0.0005 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031414 [exp] 1605 / 0 AT5G26860 1402 / 0.0 lon protease 1 (.1) Lus10040131 [exp] 367 / 2e-112 AT5G47040 1400 / 0.0 lon protease 2 (.1) Lus10001084 [exp] 349 / 6e-109 AT5G47040 994 / 0.0 lon protease 2 (.1) Lus10003009 [exp] 358 / 7e-109 AT5G47040 1420 / 0.0 lon protease 2 (.1) Lus10011038 [exp] 355 / 2e-106 AT5G47040 1413 / 0.0 lon protease 2 (.1) Lus10033496 [exp] 49 / 3e-05 AT5G64580 1057 / 0.0 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1) Lus10040918 [exp] 47 / 5e-05 AT1G03000 1041 / 0.0 peroxin 6 (.1) Lus10009814 [exp] 47 / 6e-05 AT1G03000 1168 / 0.0 peroxin 6 (.1) Lus10020879 [exp] 47 / 7e-05 AT5G64580 994 / 0.0 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G017600 [exp] 1326 / 0 AT5G26860 1428 / 0.0 lon protease 1 (.1) Potri.013G008900 [exp] 1323 / 0 AT5G26860 1467 / 0.0 lon protease 1 (.1) Potri.001G148400 [exp] 372 / 1e-114 AT5G47040 1460 / 0.0 lon protease 2 (.1) Potri.003G086000 [exp] 370 / 8e-114 AT5G47040 1461 / 0.0 lon protease 2 (.1) Potri.014G133000 [exp] 48 / 3e-05 AT1G03000 1165 / 0.0 peroxin 6 (.1) Potri.005G059700 [exp] 47 / 7e-05 AT5G64580 1349 / 0.0 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1) Potri.003G050600 [exp] 46 / 0.0002 AT3G16290 1159 / 0.0 embryo defective 2083, AAA-type ATPase family protein (.1) Potri.016G099800 [exp] 45 / 0.0002 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.015G084900 [exp] 44 / 0.0003 AT4G24710 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G098300 [exp] 44 / 0.0005 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA) CL0178 [flax] [poplar] PUA PF02190 [flax] [poplar] LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain CL0329 [flax] [poplar] S5 PF05362 [flax] [poplar] Lon_C Lon protease (S16) C-terminal proteolytic domain
Representative CDS sequence Show only first row Show all	>Lus10010919 pacid=23172473 polypeptide=Lus10010919 locus=Lus10010919.g ID=Lus10010919.BGIv1.0 annot-version=v1.0 ATGCTGAAGCTACTTTCTTCTTCTTCCTCCCGCAATCTCCACACCCACATCGCTTCACCATGCCTCCGAGCTACACCTACTCCCAGCTCCTCCGGATCCA GCCCTTTACTCAGAGCACTCAATTCCATCGCTGAGTTGAGCAGGAACAGCTACAGGCATCCCAACTTCTTCAAAAGGGCTTTCTTTTGCTCGGATTCCTC TTCCCCCGACGGCCGCGGAGTGTTGGTGGAGGTTGAATTGAGGTCCGATGAAGAAGGCGGCGACGGCGGTGGCGATTCCAGTAGCTCTTCTGCTTCTTCT TCCTCCTCCGCCATTGTTCCTTCTAATCCTCGGCCAGAAGACTATCTCACGGTATTGGCACTGCCATTGCCTCATAGACCTCTATTCCCCGGTTTCTATA TGCCTATTACTGTGAAGGATCCCAAATTGATGGCTGCATTGCAAGAAGCTCGAAAAAGGCAAGCCCCATATGCCGGTGCGTTTCTCCTGAAAGACGAGCC AGGGACCGATCCCAATGTGGTAACTGGTTCGGAGTCGGAGAAAGGAACCGACGTTCTCAAGGGGAAAGATCTCTTCAAGCGACTTCACGAAGTCGGAACA TTGGCCCAGATTTCGAGTATTTCGGACGAGCAGGTTGTTCTCATTGGTCACAGGCGACTTCGAATCACAGAGATGGCTAGTGAAGATCCCCTTACTGTGA AGGTTGATCATATCAAAGACAAACCGTATAATAAGGACGATGATGTCATCAAGGCAACTTCATTCGAAGTTATATCAACTCTCCGAGATGTTCTGAAATC GAGTTCCCTTTGGAGGGATCATGTACAAACTTACACTCAGCATATAGGTGACTTTAATTATTCAAGGTTAGCTGATTTCGGGGCTGCAATCTCCGGTGCA AACAAGTCGAATTGCCAGGAAGTGCTGGCCGAGTTGGATGTGCATAATAGGTTAAGACTTACGCTAGAATTAGTGAAGAAAGAGATGGAGATCACCAAGA TTCAGGAATCGATTGCCAAAGCAATTGAAGAAAAGATCAGCGGTGAGCAAAGGCGCTATTTATTGAATGAACAGCTCAAGGCCATAAAAAAGGAACTGGG ATTAGAGACAGATGACAAGACTGCCCTTTCCTCAAAGTTTAGGGAAAGGATTGAAGGAAAGGAAGATAAAATCCCTGCTAATGTGTTGCAAGTGATACAA GAAGAGCTCACGAAACTACAGCTTTTAGAGGCAAGCTCAAGTGAATTCAACGTCACTCGCAATTACCTGGATTGGTTGACAGCATTGCCTTGGGGAGATT ACAGCGATGAGAACTTTGATGTCCTCCGGGCACAGAAAATTCTTGACGAGGACCATTATGGATTATCTGATGTTAAGGAAAGGATATTGGAATTTATAGC TGTTGGGAAGCTCCGAGGCACTGCACAAGGGAAAATCATTTGTCTTTCTGGCCCTCCTGGAGTGGGCAAAACCAGCATTGGTAAATCAATTGCACGAGCA TTGGACCGTAAGTTCTTCCGGTTCTCAGTGGGTGGTTTATCTGATGTTGCTGAAATTAAGGGTCATCGCCGGACCTATATCGGTGCAATGCCAGGAAAGA TGGTGCAATGTCTAAAGAATGTTGGAACTGCTAACCCTCTTGTCCTGATCGACGAGATTGACAAGCTGGGAAGGGGCCATTCAGGTGATCCTGCAAGTGC TATGTTGGAGCTTCTCGATCCGGAGCAAAATGCTAACTTTCTGGATCATTATTTAGATGTCCCGATCGATCTCTCGAAGGTTCTGTTTGTGTGCACTGCA AATGTTATTGATTCGATACCGACTCCTCTTTTGGACAGAATGGAGGTCATTTCTATAGCTGGGTATATCACCGACGAAAAGATGCATATTGCAAGAGATT ACTTGGAGAAGTCTACTCGTGAAACATGCGGCATCAAGCCTGAACAGGTTGAATTAACTGATGCTGCTCTTCTTGCCCTAATTGAGAACTACTGCCGAGA AGCTGGGGTCAGGAATCTTCAGAAGCAAATCGAGAAGATCTACCGAAAGATTGCTTTGAAACTTGTGCGCCAAGGAGCCCCCGGTGTATCTCTAGCTTCT GGAGTTGAAGTCCTTTCAGATTCTGTTGCTGAAGCAGAAGTTGTGCAGGCTGATGAAGATTCCAAATCCGCAGATGAATCTACTGACTCGAAGGACTCGA AGGATACGGAGAAGCTGGAGGAAGCCGAATCGACGGGCACAGTCGAGAAGGTCTTGGTGGACACGCCAAACCTGACCGATTTCGTAGGGAACCCAGTTTC CCACGCTGAGCGCATCTACACCGAACCCCCAGCCGGTATCGTGATGGGTCTAGCCTGGACCGCAATGGGCGGTTCCACCTTGTACATAGAAACCGCTCAG GTCGAGCAAGGAGAAGGGAAAGGAACCCTCCAGCTCACCGGCCAGCTAGGTGACGTCATGAAAGAGAGCGCCCAGATAGCGCACACATACGCTCGAGCAA TGCTGCTCGAGAGAGATCCGGACAACAAGTTTTTCGCCGATACAAAGCTCCATCTACATGTGAAGGAGAAGACGATTGCGGCTAGGAGGAGCGATGTCAA GACGATCATATTCCCGTCGGCTAATCGGAGGGACTTTGATGAGCTTTCACCTCAAGTGAAGGAAGGACTTGATGTCCCTTTTGTGGACAACCCCAGCCAG ATCTATGACTTGGCCTTTGAATATGGTGATCAGAAAGCAGAATAG
AA sequence Show only first row Show all	>Lus10010919 pacid=23172473 polypeptide=Lus10010919 locus=Lus10010919.g ID=Lus10010919.BGIv1.0 annot-version=v1.0 MLKLLSSSSSRNLHTHIASPCLRATPTPSSSGSSPLLRALNSIAELSRNSYRHPNFFKRAFFCSDSSSPDGRGVLVEVELRSDEEGGDGGGDSSSSSASS SSSAIVPSNPRPEDYLTVLALPLPHRPLFPGFYMPITVKDPKLMAALQEARKRQAPYAGAFLLKDEPGTDPNVVTGSESEKGTDVLKGKDLFKRLHEVGT LAQISSISDEQVVLIGHRRLRITEMASEDPLTVKVDHIKDKPYNKDDDVIKATSFEVISTLRDVLKSSSLWRDHVQTYTQHIGDFNYSRLADFGAAISGA NKSNCQEVLAELDVHNRLRLTLELVKKEMEITKIQESIAKAIEEKISGEQRRYLLNEQLKAIKKELGLETDDKTALSSKFRERIEGKEDKIPANVLQVIQ EELTKLQLLEASSSEFNVTRNYLDWLTALPWGDYSDENFDVLRAQKILDEDHYGLSDVKERILEFIAVGKLRGTAQGKIICLSGPPGVGKTSIGKSIARA LDRKFFRFSVGGLSDVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHSGDPASAMLELLDPEQNANFLDHYLDVPIDLSKVLFVCTA NVIDSIPTPLLDRMEVISIAGYITDEKMHIARDYLEKSTRETCGIKPEQVELTDAALLALIENYCREAGVRNLQKQIEKIYRKIALKLVRQGAPGVSLAS GVEVLSDSVAEAEVVQADEDSKSADESTDSKDSKDTEKLEEAESTGTVEKVLVDTPNLTDFVGNPVSHAERIYTEPPAGIVMGLAWTAMGGSTLYIETAQ VEQGEGKGTLQLTGQLGDVMKESAQIAHTYARAMLLERDPDNKFFADTKLHLHVKEKTIAARRSDVKTIIFPSANRRDFDELSPQVKEGLDVPFVDNPSQ IYDLAFEYGDQKAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10010919 [exp]	0	1
AT5G14580			polyribonucleotide nucleotidyl...		Lus10008763 [exp]	1.0	0.9590
AT1G10490			Domain of unknown function (DU...		Lus10006807 [exp]	4.0	0.9525
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Lus10028190 [exp]	4.0	0.9248
AT1G73240			unknown protein		Lus10042457 [exp]	4.2	0.9318
AT5G55610			unknown protein		Lus10004412 [exp]	4.5	0.9308
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10037788 [exp]	5.6	0.9085
AT1G63810			unknown protein		Lus10026014 [exp]	7.4	0.9395
AT2G18900			Transducin/WD40 repeat-like su...		Lus10003637 [exp]	8.0	0.9412
AT4G26600			S-adenosyl-L-methionine-depend...		Lus10023095 [exp]	8.1	0.9377
AT1G69070			unknown protein		Lus10019174 [exp]	9.2	0.9424

Compare expression of checked genes

Lus10010919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.