Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06470 460 / 3e-161 Nucleotide/sugar transporter family protein (.1.2) AT1G53660 74 / 1e-14 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G25520 72 / 1e-13 Drug/metabolite transporter superfamily protein (.1) AT5G25400 72 / 1e-13 Nucleotide-sugar transporter family protein (.1) AT5G11230 71 / 2e-13 Nucleotide-sugar transporter family protein (.1) AT3G14410 70 / 6e-13 Nucleotide/sugar transporter family protein (.1) AT4G32390 68 / 2e-12 Nucleotide-sugar transporter family protein (.1) AT3G17430 64 / 7e-11 Nucleotide-sugar transporter family protein (.1) AT1G48230 48 / 6e-06 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G77610 47 / 1e-05 EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031370 [exp] 390 / 2e-134 AT1G06470 356 / 3e-121 Nucleotide/sugar transporter family protein (.1.2) Lus10002023 [exp] 73 / 8e-14 AT4G32390 631 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10002904 [exp] 71 / 3e-13 AT4G32390 632 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018339 [exp] 57 / 1e-08 AT3G17430 615 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016923 [exp] 56 / 2e-08 AT3G14410 496 / 1e-177 Nucleotide/sugar transporter family protein (.1) Lus10042700 [exp] 46 / 3e-05 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1) Lus10025645 [exp] 46 / 4e-05 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1) Lus10017115 [exp] 44 / 0.0002 AT3G17430 593 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10013083 [exp] 44 / 0.0003 AT3G01550 429 / 1e-149 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G278700 [exp] 501 / 2e-177 AT1G06470 542 / 0.0 Nucleotide/sugar transporter family protein (.1.2) Potri.001G394500 [exp] 77 / 3e-15 AT3G14410 496 / 5e-178 Nucleotide/sugar transporter family protein (.1) Potri.018G028900 [exp] 70 / 4e-13 AT4G32390 568 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G252500 [exp] 70 / 6e-13 AT4G32390 537 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G001700 [exp] 60 / 1e-09 AT3G17430 589 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G214300 [exp] 59 / 2e-09 AT3G17430 569 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G177200 [exp] 46 / 2e-05 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.016G043200 [exp] 45 / 5e-05 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G084500 [exp] 45 / 5e-05 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10010954 pacid=23172484 polypeptide=Lus10010954 locus=Lus10010954.g ID=Lus10010954.BGIv1.0 annot-version=v1.0 ATGTCAGTGAATGGTACTAGCATTGTGTACGGTGACGAGGGTGATGCACTGGGACATGGAATTGAGAAAGAAAAACTCACGGCCATGGAAATTGAGAATG GTTTACCTTTCAAAGAACACCTGTCGGATCCCGGGGACGATGGATTGGATTCTCTGAGCAATATTGAAATAGTGTCACCTAAATCCAAGAGTCCTTATTC AGCTGTTGATGTGTTGAAGACCTTGTTTTTCATCCTTGTGTGGTACACGTTCAGTACCTTTCTAACCTTGTATAATAAAACTCTTTTAGGAGATCATTTG GGAAGATTTCCAGCTCCACTATTGATGAATGCCTTCCATTTTGGAATGCAAGCTGTTATGTCAACGTTCATCACGTGGTACTGGTCTCACAGATTTGAAA CGACTGTTGCTATGTCGTGGAGAGATTATTTTGTTAGAGTTGTACCAACTGCTCTGGGGACAGCAATGGATGTCAACCTGAGCAATGCATCCCTTGTTTT CATTTCTGTTACCTTTGCTACAATGTGTAAATCTGCGGCACCTATATTCCTTATTCTGTTTGCTTTTGCATTCAGGCTGGAGTCTCCTAGCATTAAACTT CTTGGTATCATGATGGTAATATCTATCGGAATTTTGCTTACAGTGGCAAGAGAGACAGAATTTGAGTTTTGGGGTTTTGTGTTCGTAATGCTTGCTGCTG TTATGTCTGGATTCCGCTGGTCCATGACACAAATTCTTTTGCAGATCCTTGTTTTTGGACTGTGTTTAGGTCTGAAAAATCCCCTTACTTTGATGAGCTA TGTGGCCCCAGTTATGACACTGGCAACTGCTCTTTCTTCTCTCATCTTGGATCCATGGCATGAGTTCAGAAACACAAGTTACTTTGATAGTAATTGGCAC ACTGTTCGGAGTTGTCTACTCATGCTCTTTGGAGGAACTCTTGCCTTTTTCATGGTCTTAACTGAATATATTCTTATTTCAGTAACTAGTGCTGTTACTG TAACAATAGCTGGTGTTGTCAAGGAGGCAGTTACTATTGTGGTGGCTGTATTTTACTTCCATGACAAGTTTACCTGGCTAAAAGGAGTGGGTCTTCTGAT CATCATGGTTGGTGTTGGTCTATTCAACTGGTATAAATATGACAAGCTGCAAAAAAGGGAAACCAGTGAAGATGACTCGGCTAGGTCCTCTACCGAAAAC ATCCCCGCAAAATATGTCATCCTTGAAGAGGCAGACGATCAAGAAGATGAAACTTAA
AA sequence Show only first row Show all	>Lus10010954 pacid=23172484 polypeptide=Lus10010954 locus=Lus10010954.g ID=Lus10010954.BGIv1.0 annot-version=v1.0 MSVNGTSIVYGDEGDALGHGIEKEKLTAMEIENGLPFKEHLSDPGDDGLDSLSNIEIVSPKSKSPYSAVDVLKTLFFILVWYTFSTFLTLYNKTLLGDHL GRFPAPLLMNAFHFGMQAVMSTFITWYWSHRFETTVAMSWRDYFVRVVPTALGTAMDVNLSNASLVFISVTFATMCKSAAPIFLILFAFAFRLESPSIKL LGIMMVISIGILLTVARETEFEFWGFVFVMLAAVMSGFRWSMTQILLQILVFGLCLGLKNPLTLMSYVAPVMTLATALSSLILDPWHEFRNTSYFDSNWH TVRSCLLMLFGGTLAFFMVLTEYILISVTSAVTVTIAGVVKEAVTIVVAVFYFHDKFTWLKGVGLLIIMVGVGLFNWYKYDKLQKRETSEDDSARSSTEN IPAKYVILEEADDQEDET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06470			Nucleotide/sugar transporter f...		Lus10010954 [exp]	0	1
AT3G14170			Plant protein of unknown funct...		Lus10008138 [exp]	1.4	0.9274
AT3G26670			Protein of unknown function (D...		Lus10041504 [exp]	1.4	0.9201
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10034151 [exp]	2.0	0.9036
AT1G63430			Leucine-rich repeat protein ki...		Lus10001489 [exp]	2.2	0.8850
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Lus10031375 [exp]	3.3	0.8759
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Lus10031687 [exp]	4.2	0.8638
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Lus10036578 [exp]	6.2	0.9047
AT5G47800			Phototropic-responsive NPH3 fa...		Lus10039099 [exp]	10.0	0.8601
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10025924 [exp]	10.2	0.8649
AT1G54730			Major facilitator superfamily ...		Lus10035356 [exp]	14.5	0.8281

Compare expression of checked genes

Lus10010954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.