Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16600 212 / 1e-68 MYB ATMYB43 myb domain protein 43 (.1) AT1G66230 208 / 1e-67 MYB ATMYB20 myb domain protein 20 (.1) AT4G22680 203 / 6e-66 MYB ATMYB85 myb domain protein 85 (.1) AT4G12350 199 / 5e-64 MYB ATMYB42 myb domain protein 42 (.1) AT3G02940 187 / 6e-59 MYB ATMYB107 myb domain protein 107 (.1) AT5G62320 184 / 1e-58 MYB ATMYB99, AtMYBCU15 myb domain protein 99 (.1) AT4G28110 184 / 5e-58 MYB ATMYB41 myb domain protein 41 (.1) AT5G14340 183 / 6e-58 MYB AtMYB40 myb domain protein 40 (.1) AT4G21440 182 / 9e-57 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G16770 182 / 1e-56 MYB ATMYB9 myb domain protein 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004043 [exp] 225 / 2e-73 AT1G66230 264 / 4e-87 myb domain protein 20 (.1) Lus10002296 [exp] 214 / 6e-69 AT1G66230 263 / 1e-86 myb domain protein 20 (.1) Lus10027197 [exp] 206 / 2e-67 AT1G66230 249 / 6e-83 myb domain protein 20 (.1) Lus10038913 [exp] 204 / 1e-66 AT1G66230 247 / 3e-82 myb domain protein 20 (.1) Lus10004042 [exp] 206 / 4e-66 AT1G66230 251 / 2e-81 myb domain protein 20 (.1) Lus10032226 [exp] 204 / 1e-65 AT4G12350 295 / 7e-100 myb domain protein 42 (.1) Lus10024589 [exp] 203 / 2e-65 AT4G12350 298 / 6e-101 myb domain protein 42 (.1) Lus10032117 [exp] 194 / 6e-62 AT5G14340 244 / 9e-81 myb domain protein 40 (.1) Lus10014569 [exp] 191 / 1e-60 AT5G14340 239 / 7e-79 myb domain protein 40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G086300 [exp] 211 / 4e-68 AT5G16600 284 / 7e-95 myb domain protein 43 (.1) Potri.017G130300 [exp] 207 / 9e-67 AT5G16600 280 / 2e-93 myb domain protein 43 (.1) Potri.003G114100 [exp] 203 / 7e-66 AT4G12350 300 / 1e-102 myb domain protein 42 (.1) Potri.001G118800 [exp] 203 / 8e-66 AT4G12350 303 / 1e-103 myb domain protein 42 (.1) Potri.012G127700 [exp] 202 / 2e-65 AT4G22680 256 / 2e-85 myb domain protein 85 (.1) Potri.015G129100 [exp] 201 / 1e-64 AT4G22680 249 / 1e-82 myb domain protein 85 (.1) Potri.008G180800 [exp] 194 / 3e-62 AT5G14340 229 / 1e-74 myb domain protein 40 (.1) Potri.001G336700 [exp] 193 / 1e-61 AT5G14340 275 / 6e-93 myb domain protein 40 (.1) Potri.007G093900 [exp] 186 / 4e-58 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G074500 [exp] 185 / 6e-58 AT1G34670 290 / 1e-96 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10010974 pacid=23172529 polypeptide=Lus10010974 locus=Lus10010974.g ID=Lus10010974.BGIv1.0 annot-version=v1.0 ATGGGGAGGAAGCCATGCTGTGAGAAAGCAGGATTGAAGAAAGGGACATGGACATACGAGGAAGACCAAAAACTCATCAACTTCATCCGAACCTATGGCA CCTGCTGCTGGCGCGACCTCCCTCAGCTTGCAGGGTTGTCGAGATGTGGGAAGAGCTGCCGATTGAGGTGGACGAACTATCTACGGCCCGATTTGAAAAG AGAGCTACTCTCGGAATATGAAGAGAACATTGTGATCAATCTTCATGCTCAACTTGGCAATAAGTGGTCGAAAATTGCGGCTCAACTGCCGGGGAGAACG GATAACGAAATAAAGAACCACTGGAATAGCCGTATCAAGAAAAAGCTCCACCTTTTAGGAACCGAACCAATCTCCTGCCATAAACCAGACATCCAACTCT CAACCTCTATAAGCAGTAGCTTAACCAACCAGCCCATAAACAATGCTTCATCCGAATCGAAGGAAGCTAAGCCTTCGTCTTCAATGGACGATGATCTCCA ATCGGCCATCACCCAATTAGCTGAACACCTGGACGTTCCGGATTACAGAGACGTTACAGACTTGTCATTGTTCAAGGACTTCCTATAG
AA sequence Show only first row Show all	>Lus10010974 pacid=23172529 polypeptide=Lus10010974 locus=Lus10010974.g ID=Lus10010974.BGIv1.0 annot-version=v1.0 MGRKPCCEKAGLKKGTWTYEEDQKLINFIRTYGTCCWRDLPQLAGLSRCGKSCRLRWTNYLRPDLKRELLSEYEENIVINLHAQLGNKWSKIAAQLPGRT DNEIKNHWNSRIKKKLHLLGTEPISCHKPDIQLSTSISSSLTNQPINNASSESKEAKPSSSMDDDLQSAITQLAEHLDVPDYRDVTDLSLFKDFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Lus10010974 [exp]	0	1
					Lus10023136 [exp]	2.0	0.9607
AT4G30880			Bifunctional inhibitor/lipid-t...		Lus10016357 [exp]	2.8	0.9569
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10007246 [exp]	3.5	0.9366
					Lus10020274 [exp]	4.0	0.9149
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10021200 [exp]	4.2	0.8971
					Lus10004849 [exp]	10.8	0.8581
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024572 [exp]	12.2	0.8432
AT4G31350			Core-2/I-branching beta-1,6-N-...		Lus10026959 [exp]	12.7	0.7384
					Lus10011497 [exp]	19.7	0.9130
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10012866 [exp]	19.7	0.8080

Compare expression of checked genes

Lus10010974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.