Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16770 213 / 3e-66 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G02940 206 / 8e-64 MYB ATMYB107 myb domain protein 107 (.1) AT1G34670 204 / 1e-62 MYB ATMYB93 myb domain protein 93 (.1) AT4G21440 204 / 1e-62 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G17785 201 / 3e-61 MYB ATMYB39 myb domain protein 39 (.1) AT4G22680 193 / 2e-59 MYB ATMYB85 myb domain protein 85 (.1) AT5G65230 193 / 8e-59 MYB ATMYB53 myb domain protein 53 (.1) AT4G05100 193 / 9e-59 MYB ATMYB74 myb domain protein 74 (.1) AT4G12350 191 / 2e-58 MYB ATMYB42 myb domain protein 42 (.1) AT4G28110 190 / 6e-58 MYB ATMYB41 myb domain protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003001 [exp] 513 / 2e-178 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1) Lus10040139 [exp] 247 / 3e-81 AT5G16770 231 / 9e-76 myb domain protein 9 (.1.2) Lus10001093 [exp] 248 / 6e-80 AT5G16770 232 / 4e-74 myb domain protein 9 (.1.2) Lus10041142 [exp] 200 / 2e-61 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10036472 [exp] 197 / 2e-60 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10018418 [exp] 196 / 7e-60 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 195 / 3e-59 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10038913 [exp] 190 / 2e-58 AT1G66230 247 / 3e-82 myb domain protein 20 (.1) Lus10027197 [exp] 187 / 1e-57 AT1G66230 249 / 6e-83 myb domain protein 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G094200 [exp] 224 / 1e-70 AT5G16770 251 / 1e-81 myb domain protein 9 (.1.2) Potri.001G139900 [exp] 221 / 1e-69 AT5G16770 254 / 7e-83 myb domain protein 9 (.1.2) Potri.019G050900 [exp] 205 / 3e-63 AT5G16770 279 / 2e-92 myb domain protein 9 (.1.2) Potri.007G093900 [exp] 204 / 1e-62 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G164900 [exp] 202 / 3e-62 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.005G074500 [exp] 202 / 3e-62 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.004G033100 [exp] 201 / 2e-61 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G125900 [exp] 199 / 1e-60 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.002G096800 [exp] 198 / 2e-60 AT1G34670 305 / 2e-102 myb domain protein 93 (.1) Potri.001G408700 [exp] 198 / 2e-60 AT4G21440 275 / 1e-90 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10011031 pacid=23148692 polypeptide=Lus10011031 locus=Lus10011031.g ID=Lus10011031.BGIv1.0 annot-version=v1.0 ATGGTGAGGCCACCCTGCTGTGGAGAGGAGGATAAGATGATAGTCAAGAAAGGTCCGTGGACTGTGGAGGAAGACTCGAAGCTCGTCGACTACATCGCGA ACAAGAAGGGACGCCACGCTAACTGGAAGCTCCTGCCGAAGCTCGCGGGCTTGGACCGCTGCGGCAAGAGCTGTCGGTTGCGGTGGACGAACTACCTCCG CCCCGGTATCAAGCGGGGCGGGTTCGACGAGGAGGAAGAGCGCCTCATCGTCGACCTACACAAGGCCCTCGGTAACAAGTGGTCGAGAATTGCGACGCAC TTGCCAGGAAGGACGGATAACGAGATAAAGAACTACTACAACACGCACATAAGGAGGAAACTCTTGCGAATGGGGATAGACCCACATACACACCAACCAA GAACCGATCATCTTCATCAACAACAAGACATCGCTAATCAAATCGTCAACTTCTCTCAGATGATCGGGGCCGCCAATCAGCTGAGCAACATAATGAACAT CGATTCCTCTTCGTCTTCAACGTTGAACATTCTCGAAAATTTACGGGTGGCCGCCTCTACAACCATGCAGCAACGAGTTGTAACACATTTTGTGTTACAA CAACTGCTGTTTAATAATAACCAAACAGCCTCTCATTCACCACCGCTCCTCCTGCAGGGACAAGATTCTGCCCCGACCAGGATATTGTCTCTGGAGGACC AGTTGTTACTATTGGCTAGGGTTTTGAACCCGGTAGTGAATCTGACTACAACTGATTACCAAAAATCGGTTTACAAGCCATTTCATTTGTCCATTGCCGA TAACAACGACAAATCAAAGAGTGAAAACGACGTAAAAACCTTGATAGTCAAGAAGGAACTCATGCTGCCGGAGTTGGCCTCGTGCGAGGCTTCACCGGAG ACATCTTCGTCATCCCTTGTACACAGCAACCATCAAGAGAATGATCATTGTTCAAACTTTCCAGACAAGACACCGACATTATTTGATTCCCCGGTCGCAT CAATCGACATTGATAGTCAACTTGAAGCTTGGGAGAGACTATTGATGATGGATGATGACTTCACCGGCGGCGATGGTTTCTTCTCGTCGACGTGGACAGA TGGGTGA
AA sequence Show only first row Show all	>Lus10011031 pacid=23148692 polypeptide=Lus10011031 locus=Lus10011031.g ID=Lus10011031.BGIv1.0 annot-version=v1.0 MVRPPCCGEEDKMIVKKGPWTVEEDSKLVDYIANKKGRHANWKLLPKLAGLDRCGKSCRLRWTNYLRPGIKRGGFDEEEERLIVDLHKALGNKWSRIATH LPGRTDNEIKNYYNTHIRRKLLRMGIDPHTHQPRTDHLHQQQDIANQIVNFSQMIGAANQLSNIMNIDSSSSSTLNILENLRVAASTTMQQRVVTHFVLQ QLLFNNNQTASHSPPLLLQGQDSAPTRILSLEDQLLLLARVLNPVVNLTTTDYQKSVYKPFHLSIADNNDKSKSENDVKTLIVKKELMLPELASCEASPE TSSSSLVHSNHQENDHCSNFPDKTPTLFDSPVASIDIDSQLEAWERLLMMDDDFTGGDGFFSSTWTDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10011031 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10006534 [exp]	2.0	0.8679
AT3G26830		CYP71B15, PAD3	PHYTOALEXIN DEFICIENT 3, Cytoc...		Lus10011384 [exp]	2.4	0.8540
AT4G12410			SAUR-like auxin-responsive pro...		Lus10024600 [exp]	3.2	0.8779
AT2G43870			Pectin lyase-like superfamily ...		Lus10002123 [exp]	8.5	0.8344
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10043189 [exp]	10.6	0.8011
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10008110 [exp]	11.6	0.8228
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10010912 [exp]	12.0	0.8381
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10007344 [exp]	12.7	0.8493
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10040139 [exp]	13.3	0.8623
AT2G18570			UDP-Glycosyltransferase superf...		Lus10041713 [exp]	13.9	0.8636

Compare expression of checked genes

Lus10011031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.