Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47040 1405 / 0 LON2 lon protease 2 (.1) AT5G26860 459 / 5e-145 LON1, LON_ARA_ARA lon protease 1 (.1) AT3G05790 436 / 1e-136 LON4 lon protease 4 (.1) AT3G05780 423 / 1e-131 LON3 lon protease 3 (.1) AT5G47030 302 / 2e-95 ATPase, F1 complex, delta/epsilon subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003009 [exp] 1665 / 0 AT5G47040 1420 / 0.0 lon protease 2 (.1) Lus10040131 [exp] 1490 / 0 AT5G47040 1400 / 0.0 lon protease 2 (.1) Lus10001084 [exp] 1045 / 0 AT5G47040 994 / 0.0 lon protease 2 (.1) Lus10031414 [exp] 469 / 4e-148 AT5G26860 1402 / 0.0 lon protease 1 (.1) Lus10001083 [exp] 356 / 2e-115 AT5G47040 374 / 9e-125 lon protease 2 (.1) Lus10010919 [exp] 379 / 4e-115 AT5G26860 1275 / 0.0 lon protease 1 (.1) Lus10040130 [exp] 350 / 2e-113 AT5G47030 316 / 3e-111 ATPase, F1 complex, delta/epsilon subunit (.1) Lus10001082 [exp] 350 / 2e-113 AT5G47030 315 / 6e-111 ATPase, F1 complex, delta/epsilon subunit (.1) Lus10031492 [exp] 44 / 0.0008 AT3G05530 820 / 0.0 regulatory particle triple-A ATPase 5A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G086000 [exp] 1479 / 0 AT5G47040 1461 / 0.0 lon protease 2 (.1) Potri.001G148400 [exp] 1461 / 0 AT5G47040 1460 / 0.0 lon protease 2 (.1) Potri.003G086100 [exp] 306 / 3e-97 AT5G47030 291 / 2e-101 ATPase, F1 complex, delta/epsilon subunit (.1) Potri.005G017600 [exp] 330 / 1e-96 AT5G26860 1428 / 0.0 lon protease 1 (.1) Potri.013G008900 [exp] 329 / 2e-96 AT5G26860 1467 / 0.0 lon protease 1 (.1) Potri.014G053000 [exp] 289 / 6e-91 AT5G47030 308 / 6e-108 ATPase, F1 complex, delta/epsilon subunit (.1) Potri.007G062142 [exp] 42 / 0.0004 ATCG00470 219 / 6e-75 ATP synthase epsilon chain (.1) Potri.005G025100 [exp] 44 / 0.0007 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF05362 [flax] [poplar] Lon_C Lon protease (S16) C-terminal proteolytic domain CL0178 [flax] [poplar] PUA PF02190 [flax] [poplar] LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain CL0178 [flax] [poplar] PF02823 [flax] [poplar] ATP-synt_DE_N ATP synthase, Delta/Epsilon chain, beta-sandwich domain CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10011038 pacid=23148691 polypeptide=Lus10011038 locus=Lus10011038.g ID=Lus10011038.BGIv1.0 annot-version=v1.0 ATGGCGGATTCGGTGGAGCTCCCCAGTCGGTTGGCGATCCTGCCTTTCAGGAACAAGGTCCTCTTGCCCGGCGCCATCATCCGCATCCGCTGCACTTCTC CCAGCAGTGTGAAATTGGTGGAGCAAGAGCTATGGCAGAGAGAGGAGAAGGGTATGATTGGCATTTTGCCTGTTCAGGACACTGCTGAGGCGTCCGTCGG GTCAATGCTGTCTCAAGGAGTTGGAAGCGAGTCAGGGGGTGATAGAAGCTCGAAAGCTCAAGTGGGAGCCACCTCGGAGAGTCTCAAAGTAATTGATGGT AAAAACCAGCAGGAAGTTATTCGGTGGCACAATAGGGGAGTTGCTGCTCGTGCTTTGCATTTGTCGAGAGGGGTGGAGAAGCCGAGTGGGAGAGTGACTT ACATTGTTGTGCTTGAAGGTTTATGCAGATTCAGTGTTCAGGAACTTAGTAAGCGAGGGATGTATTACACTGCCCGGATATCTCCGGCTGAGATGACAAA GGCTGAGATGGAACAAGTGGAGCATGATCCTGACTTCGTCACACTGTCTCGACAGTTCAAAGCAACTGCCATGGAACTTATTTCAATTCTTGAGCAGAAA CAGAAACCCGGTGGCCGGACCAAAGCTCTTTTGGAGACGGTTCCTGTTCACAAGTTGGCAGATATATTTGTTGCCAGCTTTGAGATAAGTTTTGAAGAGC AGTTGTGTATGTTGGATTCTGTTGATCTGAAAGTAAGGCTTTCGAAAGCTACTGAGCTGGTTGACAGGCATTTACAGTCGATTCGTGTAGCAGAAAAAAT TACCCAAAAGGTTGAGGGACAGTTATCAAAGTCGCAGAAAGAGTTTCTTCTACGTCAGCAGATGCGTGCTATAAAAGAGGAGCTCGGTGACAATGATGAT GATGAGGATGATGTCGCTGCACTAGAAAGAAAGATGCAAAGTGCAGGAATGCCTTCAAATGTCTGGAAACATGCACAGAGGGAATTGCGGCGGCTCAAGA AGATGCAACCACAACAACCCGGATATAACAGTTCACGAGTGTATTTGGAGCTGCTTGCTGAACTTCCATGGCAGAATGCTAGTGAAGTAGCTGAACTGGA TATAAAAGCTGCGAAAGAACGTCTGGATAATGACCACTATGGTCTTGTGAAGGTCAAGCAACGGATTATAGAATATCTAGCAGTGCGCAAGCTTAAACCG GATGCACGAGGTCCAGTATTGTGTTTTGTCGGTCCACCAGGCGTCGGGAAGACATCTTTAGCATCATCTATTGCTGCTGCCTTAGGCCGGAAATTCATTC GTATCTCTCTTGGGGGTGTAAAAGACGAGGCTGATATTAGAGGGCACAGAAGAACTTACATTGGGAGCATGCCAGGGCGTCTTATTGATGGATTAAAGAG AGTCGGTGTTTGCAATCCGGTCATGCTTCTGGACGAGATTGACAAGACTGGTTCTGATGTGCGTGGCGATCCTGCATCAGCTCTGCTCGAAGTTCTGGAT CCTGAACAGAACGGGACATTTAATGATCACTATTTGAATGTTCCTTTCGACCTGTCTAAGGTGATTTTCGTGGCAACAGCAAATCGGGCGCAACCTATTC CAGCTCCACTGCTGGACCGTATGGAAGTTATTGAGCTTCCGGGTTACACTCCTGAAGAAAAGCTCAGAATCGCCATGCGACATCTGATACCTCGAGTGTT GGACCAACATGGTTTGACCTCCGATTTCTTACAAATTCCAGAGGATTCAGTAAAAATTGTAATCCAGAGGTACACCAGGGAGGCCGGTGTTCGGAACCTA GAGAGACACCTGGCTGCCTTGGCTCGTGCAGCAGCTGTCAGACTTGCAGAGCAAGACCAAACAGTGCCGCTAAGCAAGGATGTTCAACGGCTTGCCACAC CATTGCTGGAGAACAGACTTTCCGATGGAGCTGAAATGGAAATGGAAGTAATACCAATTGGCGAAAACGGTCATGAGATCTCCAACGGTTTCAGAGTTGC CTCATTGGTTGTGGATGAGGCCATGCTCGAGAAAGTTCTTGGGCCTCCAAGATTCGACGACAAAGAAGCTTCAGAACGTGTCGCAAGTCCAGGTATCACT GTTGGGCTTGTTTGGACCGCATTCGGTGGGGAAGTCCAGTTCGTGGAGGCCACATCAATGGCTGGAAAGGGTGAGTTGCATCTCACCGGACAACTTGGAG ACGTCATCAAGGAATCTGCACAGATAGCATTGACTTGGGTAAGAGCCAGGGCAACTAATCTCAAGTCGACGGATGGTCATGAAATTAGTCTTCTTGAAGG CAAGGATATCCACATACATTTCCCTGCGGGTGCCGTACCTAAGGACGGGCCTTCAGCGGGTGTGACACTCGTGACCACTCTTGTTTCGTTGTTCAGTCAG CAGCGAGTACGAGCTGATACAGCAATGACCGGAGAAATGACTTTGAGAGGCCTCGTGCTTCCTGTTGGTGGGATTAAGGATAAGATATTGGCTGCTCATC GTTACGGAATCAAGCGAGTGATTCTACCGGAGCGAAACCTCAAGGACTTGGTGGAAGTACCGGCTGCTGTCCTTGCCAATATAGAGTCGTACTCTCCATC TCTCAGAGCTATCGCCGTCTCTTCCTTCTCCGCCGTCCAGCTTTCGCCGCCGACGAAGCAACTCCGAATCATGTTGAAGCATGCATCGCGTCTGGTATCC AGATCCGTCGCTAGGCCGAAGCTCGTTCGAGCATTCTCCAGTGATGTCCCAGCTACGCCTACAGAGGACTCGGCATTCACCGCTTCGTGGAAGAAAGTGA TCCCGACGATCGATCCGCCGAAGACTCCTTCAGCTTTCATCAAGCCTCGCCCGACGACGCCGTCGACCATCCCCGCTAAGCTCACTGTCAATTTCGTCCT TCCTTATTCCACCCAGCTCGCGGAAAAAGAGGTCGATATGATAATCGTCCCAGCAACAACAGGGCAGATGGGTATCCTACCGGGCCATGTCCCAACCATA GCTGAGCTGAAACCGGGAGTGATGTCTGTGCACGAAGGAAGCGAGGTCTCCAAGTACTTTGTCAGCAGCGGGTTTGCCTTCATCCACGGGAACTCAGTTG CTGATGTGATTGCAGTCGAGGCTGTGCCTGTCGATCAAATCGATGCAAACTTGGTCCAGAAAGGGATAACCGAGTTCAACCAGAAGCTCGGTTCCGCCTC AACTGATCTCGAAAAGGCCGAGGCTCAGATTGGCGTGGACGTTTACAGTGCTCTCAATGCTGCTCTCACAGGCTAA
AA sequence Show only first row Show all	>Lus10011038 pacid=23148691 polypeptide=Lus10011038 locus=Lus10011038.g ID=Lus10011038.BGIv1.0 annot-version=v1.0 MADSVELPSRLAILPFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQREEKGMIGILPVQDTAEASVGSMLSQGVGSESGGDRSSKAQVGATSESLKVIDG KNQQEVIRWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFSVQELSKRGMYYTARISPAEMTKAEMEQVEHDPDFVTLSRQFKATAMELISILEQK QKPGGRTKALLETVPVHKLADIFVASFEISFEEQLCMLDSVDLKVRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDD DEDDVAALERKMQSAGMPSNVWKHAQRELRRLKKMQPQQPGYNSSRVYLELLAELPWQNASEVAELDIKAAKERLDNDHYGLVKVKQRIIEYLAVRKLKP DARGPVLCFVGPPGVGKTSLASSIAAALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLD PEQNGTFNDHYLNVPFDLSKVIFVATANRAQPIPAPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLTSDFLQIPEDSVKIVIQRYTREAGVRNL ERHLAALARAAAVRLAEQDQTVPLSKDVQRLATPLLENRLSDGAEMEMEVIPIGENGHEISNGFRVASLVVDEAMLEKVLGPPRFDDKEASERVASPGIT VGLVWTAFGGEVQFVEATSMAGKGELHLTGQLGDVIKESAQIALTWVRARATNLKSTDGHEISLLEGKDIHIHFPAGAVPKDGPSAGVTLVTTLVSLFSQ QRVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLANIESYSPSLRAIAVSSFSAVQLSPPTKQLRIMLKHASRLVS RSVARPKLVRAFSSDVPATPTEDSAFTASWKKVIPTIDPPKTPSAFIKPRPTTPSTIPAKLTVNFVLPYSTQLAEKEVDMIIVPATTGQMGILPGHVPTI AELKPGVMSVHEGSEVSKYFVSSGFAFIHGNSVADVIAVEAVPVDQIDANLVQKGITEFNQKLGSASTDLEKAEAQIGVDVYSALNAALTG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47040		LON2	lon protease 2 (.1)		Lus10011038 [exp]	0	1
AT4G03020			transducin family protein / WD...		Lus10033996 [exp]	4.5	0.7731
AT5G47900			Protein of unknown function (D...		Lus10019798 [exp]	4.6	0.7760
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	13.4	0.7600
AT2G42490			Copper amine oxidase family pr...		Lus10019485 [exp]	13.4	0.6936
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Lus10028731 [exp]	15.5	0.7068
AT1G22610			C2 calcium/lipid-binding plant...		Lus10001538 [exp]	16.4	0.7650
AT1G53210			sodium/calcium exchanger famil...		Lus10042848 [exp]	16.9	0.7221
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10000249 [exp]	18.8	0.6917
AT1G22790			unknown protein		Lus10028733 [exp]	21.5	0.6839
AT3G43660			Vacuolar iron transporter (VIT...		Lus10042804 [exp]	24.9	0.6265

Compare expression of checked genes

Lus10011038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.