Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49950 479 / 3e-168 GRAS GRAS family transcription factor (.1) AT5G67411 207 / 7e-65 GRAS GRAS family transcription factor (.1) AT4G37650 178 / 4e-50 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) AT3G13840 129 / 1e-32 GRAS GRAS family transcription factor (.1) AT3G03450 129 / 3e-32 GRAS RGL2 RGA-like 2 (.1) AT5G17490 127 / 8e-32 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G29065 126 / 3e-31 GRAS family transcription factor (.1) AT5G48150 125 / 3e-31 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G21450 124 / 2e-30 GRAS SCL1 SCARECROW-like 1 (.1) AT2G04890 119 / 1e-29 GRAS SCL21 SCARECROW-like 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014852 [exp] 789 / 0 AT3G49950 504 / 3e-178 GRAS family transcription factor (.1) Lus10039709 [exp] 337 / 2e-111 AT3G49950 350 / 3e-117 GRAS family transcription factor (.1) Lus10018498 [exp] 335 / 1e-110 AT3G49950 347 / 3e-116 GRAS family transcription factor (.1) Lus10025200 [exp] 154 / 6e-42 AT4G37650 484 / 8e-169 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10019281 [exp] 154 / 2e-41 AT4G37650 509 / 2e-177 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10012089 [exp] 152 / 1e-40 AT4G37650 483 / 2e-167 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10042776 [exp] 142 / 7e-37 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10011542 [exp] 142 / 1e-36 AT4G37650 499 / 3e-172 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10019361 [exp] 140 / 1e-36 AT4G37650 403 / 5e-136 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G053500 [exp] 576 / 0 AT3G49950 524 / 0.0 GRAS family transcription factor (.1) Potri.005G145600 [exp] 558 / 0 AT3G49950 521 / 0.0 GRAS family transcription factor (.1) Potri.007G119000 [exp] 354 / 2e-118 AT3G49950 369 / 7e-125 GRAS family transcription factor (.1) Potri.017G041500 [exp] 352 / 7e-118 AT3G49950 370 / 2e-125 GRAS family transcription factor (.1) Potri.017G019900 [exp] 172 / 2e-48 AT4G37650 405 / 1e-137 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G132000 [exp] 165 / 3e-46 AT4G37650 410 / 4e-140 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G063300 [exp] 167 / 4e-46 AT4G37650 576 / 0.0 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.001G168800 [exp] 138 / 2e-35 AT3G13840 481 / 6e-166 GRAS family transcription factor (.1) Potri.005G186500 [exp] 137 / 4e-35 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 137 / 5e-35 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10011076 pacid=23165721 polypeptide=Lus10011076 locus=Lus10011076.g ID=Lus10011076.BGIv1.0 annot-version=v1.0 ATGAGCAACAATAACCAGCAGACAGGATCAGGAGGAGGAGTACTGAGTCAAATTCAATGGCCAGGCCTACTCCCAATTACTACTACTACATCCAAGTCAT TTGGAAATTTCGGAGACGCAAACTGCATGGAGCAGCTATTAGTCCACTGCGCCAACGCTATCCAGACCAACGACTCCACTCTCGCCCAGCAGATACTGTG GGTCCTCAACAACATCGCTCCTCCAGATGGCGACTCCAACCAGCGACTCACTTGCGCCTTCCTCCGAGCCCTCGTCGCCCGTGCCGCTAAAACCGGCACC TGCCAGCTCCTCGCCGCTCGCTACTCCTCCACTTATAACAACCTCGTCCCCATCCCTACCCACCGATTCTCCGTCGTAGAGCTTGCCTCCTTCATCGACC TCACTCCTTGGCACCGCTTCGGCTTCACAGCCGCCAATTCCGCCATCCTCGACTCCATCGAGGGATACTCTTCCGTACACCTTGTCGACCTCGGATCTAC CCACTGCATGCAGATCCCTACTTTGATCGACGCTATCTCCTCCCGGTTCGACCCCCCGCCACTAGTCAGGCTTACAGTCGTCGCCGCCGCGGAAGAAGGA ACTCCCGCCACTACTCTGCCACCGCCTCCGCCTGTACTAGATCTCTCCTACGAAGAATTGGGGTCAAAGCTGGTCAACTTCGCAAGGTCACGGAACGTAG CGATGGAATTCAGAGTCGTGACCTCCTCCTACTCGGACGGATTCCAATCATTAATCGAGCACCTTCGAATACAACAAATCCTCTACTCGGAATCATCGTC CGCCAGTACCGCAGAAGCACTGATGATTAACTGCCACATGATGCTGCACTACATCCAAGACGAAGCAACGTCATCATCATTGGTTTCGGCGAGGGAGATG TTTCTGAAGTCCATAAGGAGCCTGGAGCCGACGGCGGTAGTGATGGTGGAGGAGGACGCGGAGCTGAGTGGGGGGAATTTGGTGAGCAGGCTGAGGTCAG CGTTCAACTACTTCTGGATACCGTTCGACGCGGTGGAGGCGTTTCTGCCGGCGGGGAGTAGGCAGAGACAGTGGTACGAGGCGGAGGTGTGTTGGAGGAT AGAGAACGTGATAGCTCAGGAAGGTGTGCAGAGAGTGGAGAGAGGGGAAGGGAAGTCGAGGTGGGTCCAGAGGATGAGAAACGCTGCGTTTAAGGGAGTT GGGTTTGGTGAGGAATGCTTGGCGGAGGTGAGAGGGATGCTTGGGGAACATGCCGCCGGGTGGGGTTTGAAGAGGGAAGAAGATGATCAACACCTTCTTC TCACCTGGAAAGGCCATAACGTTGCTTTCGCCACTGCTTGGATTCCTAACTAG
AA sequence Show only first row Show all	>Lus10011076 pacid=23165721 polypeptide=Lus10011076 locus=Lus10011076.g ID=Lus10011076.BGIv1.0 annot-version=v1.0 MSNNNQQTGSGGGVLSQIQWPGLLPITTTTSKSFGNFGDANCMEQLLVHCANAIQTNDSTLAQQILWVLNNIAPPDGDSNQRLTCAFLRALVARAAKTGT CQLLAARYSSTYNNLVPIPTHRFSVVELASFIDLTPWHRFGFTAANSAILDSIEGYSSVHLVDLGSTHCMQIPTLIDAISSRFDPPPLVRLTVVAAAEEG TPATTLPPPPPVLDLSYEELGSKLVNFARSRNVAMEFRVVTSSYSDGFQSLIEHLRIQQILYSESSSASTAEALMINCHMMLHYIQDEATSSSLVSAREM FLKSIRSLEPTAVVMVEEDAELSGGNLVSRLRSAFNYFWIPFDAVEAFLPAGSRQRQWYEAEVCWRIENVIAQEGVQRVERGEGKSRWVQRMRNAAFKGV GFGEECLAEVRGMLGEHAAGWGLKREEDDQHLLLTWKGHNVAFATAWIPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49950	GRAS		GRAS family transcription fact...		Lus10011076 [exp]	0	1
AT3G49950	GRAS		GRAS family transcription fact...		Lus10014852 [exp]	1.0	0.9649
AT3G26590			MATE efflux family protein (.1...		Lus10036854 [exp]	3.5	0.9370
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10002661 [exp]	4.0	0.9319
AT2G12646			PLATZ transcription factor fam...		Lus10008814 [exp]	5.1	0.9418
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	5.7	0.9409
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Lus10007124 [exp]	8.5	0.9348
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10001816 [exp]	8.8	0.9326
AT2G17080			Arabidopsis protein of unknown...		Lus10025120 [exp]	11.2	0.9319
					Lus10002087 [exp]	11.4	0.9290
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10006664 [exp]	12.0	0.9361

Compare expression of checked genes

Lus10011076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.