Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24530 472 / 3e-167 AAA-type ATPase family protein / ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043218 [exp] 566 / 0 AT3G24530 743 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10023642 [exp] 526 / 0 AT3G24530 773 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10034913 [exp] 507 / 2e-180 AT3G24530 748 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10005293 [exp] 142 / 2e-42 AT3G24530 146 / 5e-43 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10011177 [exp] 42 / 0.0004 AT4G04910 1204 / 0.0 N-ethylmaleimide sensitive factor, AAA-type ATPase family protein (.1) Lus10015440 [exp] 42 / 0.0005 AT4G04910 1200 / 0.0 N-ethylmaleimide sensitive factor, AAA-type ATPase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081000 [exp] 491 / 1e-174 AT3G24530 754 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Potri.006G158600 [exp] 486 / 1e-172 AT3G24530 741 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10011096 pacid=23167517 polypeptide=Lus10011096 locus=Lus10011096.g ID=Lus10011096.BGIv1.0 annot-version=v1.0 ATGGAAGAACTTGAGAAAGCATTGTCAAACATAGTAGGGTTGCATGATCTCAAGGTTCAACTAAGAAAATGGGCCAAGGGGATGCTTTTGGACGAAAGGC GCAGGGCACTTGGTCTGAAACTAGGTGTTAGAAGGCCTCCTCATATGGCTTTTCTTGGAAATCCTGGAACAGGTAAGACCATGGTAGCACGAATACTTGG AAGATTGCTCCATCTGGTTGGCATCCTGCCTACAGATCGAGTTACTGAAGTACAACGTACGGATTTGGTTGGCGAATTCGTTGGCCATACCGGACCAAAA ACTAGGAAGAAGATCAAAGAAGCCGAGGGAGGAATTCTTTTCGTGGACGAGGCATACCGTCTTATACCAATGCAGAAAGCTGACGACAAGGATTACGGGG TAGAAGCCTTGGAAGAGATAATGTCAGTCATGGACAGCGGGAAGATTGTTGTCATATTTGCTGGTTACAGTGAACCGATGAAACGTGTAATCGCTTCGAA TGAAGGATTCTGCAGGAGGGTAACCAAGTTCTTCACATTCGACGACTTCTCTTCACAGGACTTGGCCAACATTGTCAATATAAAGATGGCTAGCCAAGAA GAACAAGGCATGCTGTATGGATTCCAGTTACATCGTACTTGCAACGTCGATGCCATGGAGAGGTTGATAGGGAGAGAGAGCACGGAGAAGCAGCGGAGGG AGATGAATGGAGGGCTAGTGGATACCATGCTGGTGAATGCTAGAGAGAATCTGGATCTCAGACTGGAATTTGACTGCGTTGATGCTGACGAACTTCGGAC AATCACGTTGGAGGACCTTGAAGCAGGATTGCGGTTGTTGTCTCAGTTATGA
AA sequence Show only first row Show all	>Lus10011096 pacid=23167517 polypeptide=Lus10011096 locus=Lus10011096.g ID=Lus10011096.BGIv1.0 annot-version=v1.0 MEELEKALSNIVGLHDLKVQLRKWAKGMLLDERRRALGLKLGVRRPPHMAFLGNPGTGKTMVARILGRLLHLVGILPTDRVTEVQRTDLVGEFVGHTGPK TRKKIKEAEGGILFVDEAYRLIPMQKADDKDYGVEALEEIMSVMDSGKIVVIFAGYSEPMKRVIASNEGFCRRVTKFFTFDDFSSQDLANIVNIKMASQE EQGMLYGFQLHRTCNVDAMERLIGRESTEKQRREMNGGLVDTMLVNARENLDLRLEFDCVDADELRTITLEDLEAGLRLLSQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24530			AAA-type ATPase family protein...		Lus10011096 [exp]	0	1
AT3G24530			AAA-type ATPase family protein...		Lus10011097 [exp]	1.7	0.8776
AT1G45688			unknown protein		Lus10010232 [exp]	7.3	0.8643
AT3G21780		UGT71B6	UDP-glucosyl transferase 71B6 ...		Lus10026793 [exp]	13.9	0.8831
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10029893 [exp]	19.8	0.8806
AT2G48030			DNAse I-like superfamily prote...		Lus10027979 [exp]	36.3	0.8739
AT5G04190		PKS4	phytochrome kinase substrate 4...		Lus10040995 [exp]	42.2	0.8727
AT3G24530			AAA-type ATPase family protein...		Lus10043218 [exp]	44.5	0.8663
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10028316 [exp]	59.6	0.8626
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10029096 [exp]	118.3	0.7656
AT4G35320			unknown protein		Lus10001621 [exp]	137.0	0.7818

Compare expression of checked genes

Lus10011096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.