Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 556 / 4e-177 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G36930 546 / 3e-174 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G12010 510 / 3e-160 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27170 457 / 5e-139 transmembrane receptors;ATP binding (.1.2) AT5G11250 450 / 3e-138 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G38340 438 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 432 / 2e-131 TAO1 target of AVRB operation1 (.1) AT5G48770 430 / 9e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 429 / 5e-130 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 420 / 6e-129 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003749 [exp] 819 / 0 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 558 / 6e-178 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018616 [exp] 549 / 9e-174 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 538 / 2e-170 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10030839 [exp] 530 / 9e-168 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10005171 [exp] 521 / 9e-165 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10029722 [exp] 509 / 5e-161 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011741 [exp] 461 / 3e-142 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10019708 [exp] 465 / 1e-140 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G104301 [exp] 790 / 0 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G097300 [exp] 780 / 0 AT5G17680 598 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G098550 [exp] 775 / 0 AT5G17680 593 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G105201 [exp] 763 / 0 AT4G12010 549 / 4e-174 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.013G097000 [exp] 761 / 0 AT5G17680 571 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104901 [exp] 758 / 0 AT5G17680 536 / 2e-167 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G103701 [exp] 756 / 0 AT5G17680 544 / 5e-170 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G098000 [exp] 744 / 0 AT5G17680 575 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069200 [exp] 742 / 0 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.008G220200 [exp] 676 / 0 AT5G36930 560 / 3e-180 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10011104 pacid=23167537 polypeptide=Lus10011104 locus=Lus10011104.g ID=Lus10011104.BGIv1.0 annot-version=v1.0 ATGGCCTCCGCCATCCACAACCCGCCTTCCCCTTCATCATTTGCGGCGGACTACGACGTTTTCCTGAGTTTCCGAGGCGCCGACACTCGCCACAATTTCA CAGCCCATCTATACAGAGCACTAATTCAGAGAGGAATCAAGGCATACAGGGACGACAACGAACTTACGAGAGGGGAGACCATCGATTCCTCCCTCCTCCA AGCCATCGAATCTTCCAGATTCTCTCTCGTCGTGTTCTCGAAATCGTACGCAGAGTCCCCATGGTGTTTGGACGAGCTCGTCAAAATTGTTGACTGCAGG AGGCGCCTAGGTCAGGGTTTGCTGCCTGTGTTCTATGATGTGGATCCCTCAGTTGTCGCTGAACAGAGTGGAGTCTACAGGGACGCGTTTGTTGAACATG AGCTGAGGTACTCTCCAGGACATGTGCAGAGATGGAAGGAGGCTCTTGAAGAAGCGGGTAATATGTCTGGATGGGATGTTCAAAACAAGGACCAATCCGA AGTAGTTAGAGAAATAGCTGAAACAATTTGGCTTGAGTTGAGCCGCTTGTCGCCAGCTATCATAGACGGCTTGGTTGGGATGGGTTCACGTATGCACAAA CTTAAGGAGCTTATTGGTGAAGATGATTCGGATGATGTGCGATTCATAGGAATCTGTGGTATGGGAGGCATTGGCAAAACAACTTTAGCCCGAGTTGTTT ACAATGAGATAAGTCGGAAGTTTCAAAATGGAAGGCGTTTTCTTGAAAATGTTAGAGACTCCTTTTTTAAGCAAGGAGCAGTGATTCTGCAACAGCATCT TCTTTCAGGAGTCTTGATGGAGAAGAACCTCAAGATTTGGGATGCCCACACCGGAACGCTGATGATAAAGAAGAGTTTGCAGAACAAAAAGGTTCTTCTA GTTCTGGATGATGTGGACTCCCTGGAGCAGTTAGAGATGCTTGCTGCGAATCGCGGTTGGTTTGGTCCGGGAAGTCGTATCATCATAACGAGTAGGAATC AACGGTTGTTGAATAGACATGAAGCTTGTGAGGTGGTTAAGCTCGAGGGATTGAGGTATGGAGAGGCTCTTACACTTTTTAGTTTGAATGCCTTTAAGCA ACATGAGCCGAGAGAAGAATTTAAGGAGTTGTCCGTGCGTGTCTTGGAGTATGCTCAAGGCCTCCCCCTTGCAATTAGAGTCCTGGCCAGTTTTCTTGGT GGAAGAAGCAAAAGAGAGTGGGAAAGTGCGATTACTAGTTTGAAGGACTACTCTACTGACATTCTAGATGTGCTCAAGATAAGTTTTGATGCACTGAATA AACATGACCAAGACATATTTTTGGACATTGCGTGTTTCTTTAACTGCAAGAGCATTAGAGAGGTGAAGAAAGTACTCGATATCTGTGGTTTTTGTGCAGA CATTGGAGTACAGAATCTCGTAGAGAAGTCTCTCCTGACTTTTTCAGACACTGGAAAATTGGGGATGCATGATCTGTTGCGAGACATGGGTAGAGAAATT GTTTTTCACGAATCTCCCAGGAATCCTGGAAGGCGCAGTCGATTGTGGGATCCCGAAGATGTCCTTTCTGTGTTGATTACACCAATGGGAAGGGAAGAGG TGGAAGCCATTGTATTGGATCTACCAGAGATGGAGGAGATGCAATTAAATAGGGAAGCTTTCTCAAATATGTATAGTCTGAGACTGCTTATCATACGCAA GGCCGAATTTGATGCAGGACCCGTCAATCTTCCCAGTGAATTGAGATTTCTTGAATGGGATGGGTACCCTGCAGACTCGTTTCCGGCTTCTTTTAGACAC AGTAAACTCGTGGAACTTATCATGCACCGAAGGAACTTGAGTCGGCTCTGGCATGGAAAGGCGAAGATGAGCAACCTGAAAGCCATAGATTTAAGTCACT CTCATAATCTAATCAAAACTCCAGATCTAAGCTTGGCTCCAAATGTAGAGAGATTGATTTTCGAAGACTGCACCAGCCTTTGCGATGTTCATCCAACAAC GGGTTCTCTTAAAAAGCTTACTTTCCTGAGGTTTAGCGGCTGCACGAAACTCAAAGATCTCCCTGGTATGGTTGGAAAACTACTGGAGCTACATTTAGAT GGCACCGCTATCAAAGATGAAGAACTCTACCGGATAGTCCAGTGGGCAACGAATTTAACATTACTGAGTCTCAAACATTGTGGGAGCCTAAAGTCCCTCC CAAGGAGCTTTGGCAGCTTGAGACAGTTAGAGACGCTTAACCTATGTGGCTGTTCTCAGCTTGAAAATCTGCCAGATGAGTTGGGAGACTTAGAGAGCCT TGTGGAACTTGATTTTAGTGGGACAGCAATTACCGAGCTGCCAACCTCTATTTTCTATCTCAAGAAACTGAAAGTAATATCATTTCAGGGCTGCAAGGGA CCATTATTATACGAGTCAGCCCAGCGCGCATTCACATCTTCAAGTCAACATCACTTGTTAATAAACTGTTACAACATGAAGTTGCCTGCCTTGTTTGGTT ACCATTCAATAACAACTCTGGACCTGGGGAACTGTGGGCTGAGGGAAGGAGATCTTCCAAGAGATATGGGGATCTTGTTTCCGTCCTTGGAGTTGTTGGA TCTAAGCAATAACGACTTTTTCAGCCTGCAAATCATCAGCCAACTTTCAAGGCTTTACTCGCTTCGTTTAGACAACTGCATGATGTTAACATCTCTGCCG GAACTTCCTTCGAGGGTTGAGTTTCTGTACGTTAACTGCTGCATTTCGTTGAGGGAAATGCCGGAGATGAAGCGCAGGGGAAATCTTTTCTATTTTGAAG CTCTCGACTGTTCCAACCTCTATGATGAGAATGGTATTTCTCTGGACACCGCTTGGCTTAACCTGCTTACAAGACCTCTGCTGAGGGGAGAGGAGGCTGT ACCACTTGGGCGGTTGATGTTCACAGTTCCAGGGAGCAGAATTCCAAAATGGTTCACCCATCAGATGGAAGGCGGCTCAATATGCGTATCAGTCCCCGAC TACTCAGCAGACAAAATGATGGGACTTGCGCTATGTGCTGTGTACAGGAATGCAGGGCGGCATCACATTTGCTTTTTCTACGTGCCATGGGACAGCATTT TGTTTCTTTTAAAAGGGCATGAGAATCAGCGGGCATTTGTTGAGTTGTCGTTTGAGAAATCGCCCTTCTCCCATCTCATAATATCAGGTGCTTCTCGGGG AGGAGCGGAGGTTATAAGTTGTGGTTATCGCTTGGTGTCCCTTGGATATGTTGAGCAGCTGACGGTGAGTCCTCGTGGCGGCGGCAGCTGTGATGGCGGT AACGAGTACGACGATGATGACAGTGACGACGACGACAATGACACAGCTGGGATTAGGAGACTCGTGTTTGATGGATCCCGCAGTATGGTCTATCTTTGTG CTAACGACTATGTATTTGTTCGTATCTTGAAAGTTCACAAGTGCAACCGCAGAAAGGCTGGTTTTTCTTTGGTCAACAAAATTAACGGAACGAATTGCCA ATTGGTAGACAATTTGTTAAACAATAACGTGGAGAGGGAAAAATTTGATCTTGGGAAAGAGAAGGAAGAGATGGAACTCCAGAAGTGCTTATCATGCGAG GAATGGCCCTAA
AA sequence Show only first row Show all	>Lus10011104 pacid=23167537 polypeptide=Lus10011104 locus=Lus10011104.g ID=Lus10011104.BGIv1.0 annot-version=v1.0 MASAIHNPPSPSSFAADYDVFLSFRGADTRHNFTAHLYRALIQRGIKAYRDDNELTRGETIDSSLLQAIESSRFSLVVFSKSYAESPWCLDELVKIVDCR RRLGQGLLPVFYDVDPSVVAEQSGVYRDAFVEHELRYSPGHVQRWKEALEEAGNMSGWDVQNKDQSEVVREIAETIWLELSRLSPAIIDGLVGMGSRMHK LKELIGEDDSDDVRFIGICGMGGIGKTTLARVVYNEISRKFQNGRRFLENVRDSFFKQGAVILQQHLLSGVLMEKNLKIWDAHTGTLMIKKSLQNKKVLL VLDDVDSLEQLEMLAANRGWFGPGSRIIITSRNQRLLNRHEACEVVKLEGLRYGEALTLFSLNAFKQHEPREEFKELSVRVLEYAQGLPLAIRVLASFLG GRSKREWESAITSLKDYSTDILDVLKISFDALNKHDQDIFLDIACFFNCKSIREVKKVLDICGFCADIGVQNLVEKSLLTFSDTGKLGMHDLLRDMGREI VFHESPRNPGRRSRLWDPEDVLSVLITPMGREEVEAIVLDLPEMEEMQLNREAFSNMYSLRLLIIRKAEFDAGPVNLPSELRFLEWDGYPADSFPASFRH SKLVELIMHRRNLSRLWHGKAKMSNLKAIDLSHSHNLIKTPDLSLAPNVERLIFEDCTSLCDVHPTTGSLKKLTFLRFSGCTKLKDLPGMVGKLLELHLD GTAIKDEELYRIVQWATNLTLLSLKHCGSLKSLPRSFGSLRQLETLNLCGCSQLENLPDELGDLESLVELDFSGTAITELPTSIFYLKKLKVISFQGCKG PLLYESAQRAFTSSSQHHLLINCYNMKLPALFGYHSITTLDLGNCGLREGDLPRDMGILFPSLELLDLSNNDFFSLQIISQLSRLYSLRLDNCMMLTSLP ELPSRVEFLYVNCCISLREMPEMKRRGNLFYFEALDCSNLYDENGISLDTAWLNLLTRPLLRGEEAVPLGRLMFTVPGSRIPKWFTHQMEGGSICVSVPD YSADKMMGLALCAVYRNAGRHHICFFYVPWDSILFLLKGHENQRAFVELSFEKSPFSHLIISGASRGGAEVISCGYRLVSLGYVEQLTVSPRGGGSCDGG NEYDDDDSDDDDNDTAGIRRLVFDGSRSMVYLCANDYVFVRILKVHKCNRRKAGFSLVNKINGTNCQLVDNLLNNNVEREKFDLGKEKEEMELQKCLSCE EWP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17680			disease resistance protein (TI...		Lus10011104 [exp]	0	1
AT5G57580			Calmodulin-binding protein (.1...		Lus10011248 [exp]	2.4	0.8422
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10028459 [exp]	3.2	0.8491
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031472 [exp]	7.7	0.8427
AT2G33490			hydroxyproline-rich glycoprote...		Lus10032001 [exp]	8.5	0.7947
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10027742 [exp]	9.4	0.8184
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020773 [exp]	9.6	0.8307
AT3G60450			Phosphoglycerate mutase family...		Lus10009779 [exp]	10.5	0.8160
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031484 [exp]	11.6	0.8277
AT5G07630			lipid transporters (.1)		Lus10027222 [exp]	12.2	0.6570
AT1G77480			Eukaryotic aspartyl protease f...		Lus10025687 [exp]	13.2	0.8225

Compare expression of checked genes

Lus10011104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.