Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11590 137 / 1e-40 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT4G32800 130 / 2e-38 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G25810 129 / 8e-38 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT2G44940 129 / 3e-37 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G16280 127 / 6e-37 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G16750 124 / 4e-36 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G35700 122 / 2e-35 AP2_ERF ATERF38 ERF family protein 38 (.1) AT2G25820 121 / 1e-34 AP2_ERF ESE2 ethylene and salt inducible 2, Integrase-type DNA-binding superfamily protein (.1) AT3G60490 121 / 3e-34 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G01250 110 / 1e-30 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043240 [exp] 150 / 1e-45 AT5G11590 176 / 1e-54 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10034949 [exp] 146 / 3e-43 AT4G32800 169 / 3e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10002801 [exp] 130 / 4e-38 AT5G11590 209 / 4e-68 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10038607 [exp] 122 / 1e-35 AT5G11590 168 / 1e-52 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10038270 [exp] 120 / 2e-34 AT5G11590 168 / 4e-52 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10001601 [exp] 120 / 2e-34 AT5G11590 159 / 1e-48 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10007799 [exp] 113 / 1e-32 AT2G44940 136 / 7e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10004738 [exp] 115 / 2e-32 AT2G35700 144 / 7e-44 ERF family protein 38 (.1) Lus10025834 [exp] 115 / 3e-32 AT5G11590 164 / 2e-50 TINY2, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085700 [exp] 137 / 6e-40 AT4G32800 155 / 4e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.006G163400 [exp] 135 / 1e-39 AT4G32800 159 / 6e-48 Integrase-type DNA-binding superfamily protein (.1) Potri.018G043900 [exp] 132 / 2e-38 AT5G11590 212 / 5e-69 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G187500 [exp] 130 / 4e-38 AT5G25810 157 / 9e-48 TINY, Integrase-type DNA-binding superfamily protein (.1) Potri.003G050700 [exp] 129 / 9e-38 AT5G11590 166 / 5e-51 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.003G079300 [exp] 127 / 8e-37 AT4G16750 150 / 7e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.014G055700 [exp] 126 / 3e-36 AT2G44940 206 / 2e-65 Integrase-type DNA-binding superfamily protein (.1) Potri.001G155700 [exp] 125 / 9e-36 AT2G44940 159 / 1e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.002G141200 [exp] 122 / 1e-34 AT2G44940 158 / 6e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.006G238600 [exp] 113 / 3e-31 AT5G11590 199 / 8e-64 TINY2, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10011123 pacid=23167573 polypeptide=Lus10011123 locus=Lus10011123.g ID=Lus10011123.BGIv1.0 annot-version=v1.0 ATGGCCGCTGCTGATTCTCCGCCACCACCCACTGCTTCCTCCTCCTCCTCCTCCTCCTCATCCTCCGGGTTTTCGGGTCAACCCATCCCCGACCCGGAAC CTAATAAAACTAACAGTAATATTAATAATAATAAAAGTAAGCTGAAGAGAGGGAGAGGAGACGGCGGCTCCGGCGGCGGAGGGAGTGGGAGGACGACGAA GCATCCAGTGTACAGAGGGGTGCGAATGAGGACGTGGGGCAAGTGGGTTTCCGAGATTCGGGAGCCCCGTAAGAAGAGCCGGATCTGGTTGGGCACTTTC GCCACTCCTGAAATGGCGGCACGTGCTCACGACGTTGCCGCCTTGTCCATCAAAGGCCCCGCCGCCGCCGCCATACTTAACTTCCCCCAACTCTCCGCCT CCCTCCCCCGGCCAGTCTCCAGCTCCCCCGCGACGTCCGGGCCGCTGCCCTCAAAGCCGCCTCCATGGACTTCCCCCCCACCACCGTGGCTACTACTCCG GATAAGCTTTGCGAGATAG
AA sequence Show only first row Show all	>Lus10011123 pacid=23167573 polypeptide=Lus10011123 locus=Lus10011123.g ID=Lus10011123.BGIv1.0 annot-version=v1.0 MAAADSPPPPTASSSSSSSSSSGFSGQPIPDPEPNKTNSNINNNKSKLKRGRGDGGSGGGGSGRTTKHPVYRGVRMRTWGKWVSEIREPRKKSRIWLGTF ATPEMAARAHDVAALSIKGPAAAAILNFPQLSASLPRPVSSSPATSGPLPSKPPPWTSPPPPWLLLRISFAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10011123 [exp]	0	1
AT1G50720			Stigma-specific Stig1 family p...		Lus10011146 [exp]	2.6	0.9674
AT5G54370			Late embryogenesis abundant (L...		Lus10038588 [exp]	5.8	0.9497
AT5G45120			Eukaryotic aspartyl protease f...		Lus10018286 [exp]	6.0	0.9328
AT5G44390			FAD-binding Berberine family p...		Lus10026775 [exp]	10.0	0.9213
AT5G60520			Late embryogenesis abundant (L...		Lus10015149 [exp]	10.5	0.9306
AT5G54370			Late embryogenesis abundant (L...		Lus10037886 [exp]	14.4	0.9318
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10033617 [exp]	16.0	0.9084
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10021626 [exp]	17.7	0.8920
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10034703 [exp]	18.5	0.9200
AT5G60520			Late embryogenesis abundant (L...		Lus10031532 [exp]	20.0	0.9269

Compare expression of checked genes

Lus10011123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.