Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20570 147 / 1e-44 AtENODL9 early nodulin-like protein 9 (.1) AT5G53870 116 / 6e-31 AtENODL1 early nodulin-like protein 1 (.1) AT4G31840 111 / 7e-31 AtENODL15 early nodulin-like protein 15 (.1) AT2G25060 110 / 3e-30 AtENODL14 early nodulin-like protein 14 (.1) AT4G30590 105 / 2e-28 AtENODL12 early nodulin-like protein 12 (.1) AT4G27520 104 / 1e-26 AtENODL2 early nodulin-like protein 2 (.1) AT4G28365 100 / 2e-26 AtENODL3 early nodulin-like protein 3 (.1) AT5G25090 98 / 2e-25 AtENODL13 early nodulin-like protein 13 (.1) AT5G57920 92 / 2e-23 AtENODL10 early nodulin-like protein 10 (.1) AT4G32490 92 / 8e-23 AtENODL4 early nodulin-like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043063 [exp] 271 / 4e-93 AT3G20570 153 / 4e-47 early nodulin-like protein 9 (.1) Lus10003432 [exp] 107 / 4e-29 AT5G25090 167 / 5e-53 early nodulin-like protein 13 (.1) Lus10026880 [exp] 106 / 1e-28 AT5G25090 167 / 8e-53 early nodulin-like protein 13 (.1) Lus10018617 [exp] 105 / 3e-28 AT4G28365 150 / 5e-46 early nodulin-like protein 3 (.1) Lus10039852 [exp] 105 / 3e-28 AT4G28365 150 / 8e-46 early nodulin-like protein 3 (.1) Lus10022318 [exp] 104 / 5e-28 AT3G18590 146 / 4e-45 early nodulin-like protein 5 (.1) Lus10014880 [exp] 102 / 4e-27 AT3G18590 144 / 1e-43 early nodulin-like protein 5 (.1) Lus10032111 [exp] 100 / 3e-26 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1) Lus10036257 [exp] 93 / 7e-24 AT2G25060 110 / 3e-31 early nodulin-like protein 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G419200 [exp] 162 / 4e-50 AT3G20570 153 / 1e-46 early nodulin-like protein 9 (.1) Potri.011G135400 [exp] 158 / 6e-49 AT3G20570 138 / 4e-41 early nodulin-like protein 9 (.1) Potri.011G117800 [exp] 115 / 8e-31 AT5G53870 158 / 3e-45 early nodulin-like protein 1 (.1) Potri.017G011200 [exp] 110 / 3e-30 AT4G32490 157 / 2e-48 early nodulin-like protein 4 (.1) Potri.001G398800 [exp] 114 / 5e-30 AT4G28365 145 / 9e-42 early nodulin-like protein 3 (.1) Potri.006G184100 [exp] 107 / 3e-29 AT4G31840 174 / 5e-56 early nodulin-like protein 15 (.1) Potri.006G264600 [exp] 103 / 1e-27 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.018G018200 [exp] 100 / 2e-26 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.001G338800 [exp] 98 / 1e-25 AT5G14345 145 / 6e-45 early nodulin-like protein 21 (.1) Potri.001G187700 [exp] 91 / 1e-22 AT1G79800 176 / 2e-56 early nodulin-like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10011158 pacid=23167540 polypeptide=Lus10011158 locus=Lus10011158.g ID=Lus10011158.BGIv1.0 annot-version=v1.0 ATGGCAACAACAGGGTCGAAATTCGCGGTTGGTGTGCTGGGACTCTCCTGTCTTATGCTCTTGTCCGTCCAGAAAGCCACTGCATTCCAGTTCACCGTCG GAGGTGCCAAAGGTTGGATCGTTCCTGATAATTCCTCCGGCTTGAACTACAATTCTTGGGCCGAGAGCAGTCGCTTCTCCGTCGGAGACTCCATCGTGTT TGTGTACGACCATGCTCACGACTCAGTGCTGGAAGTGAGCAAGGCCGACTACGACAGCTGCACTACGAGTTCCCCGGCCGGAACCTACACCGACGGCCAC ACGGTCTTCACTTTCAACCACTCGGGGGCACATTACTTCATCAGTGGCAACAAAGACCACTGCCTCAAGAATCAGAAGGTCGTCATTGTAGTTTTGGCTG ACAGAAGCAGCAAACCACCGTCTCCCTCCACTCCTCCTCCATCACCAGCACCGGCCACCGACTACTCGCCTCCGGCACTCCAGCTCACCCCTGTCTCGCC TCCTGAAGGGTATTCGCCACACAATGCAGCATCATCTTCCATGACAGCTGCGGCAGGAGTAATTGCTTCTGCCGGAGCCTTCATGGCCTCTTCCCTGGTT TTCACATTCTGA
AA sequence Show only first row Show all	>Lus10011158 pacid=23167540 polypeptide=Lus10011158 locus=Lus10011158.g ID=Lus10011158.BGIv1.0 annot-version=v1.0 MATTGSKFAVGVLGLSCLMLLSVQKATAFQFTVGGAKGWIVPDNSSGLNYNSWAESSRFSVGDSIVFVYDHAHDSVLEVSKADYDSCTTSSPAGTYTDGH TVFTFNHSGAHYFISGNKDHCLKNQKVVIVVLADRSSKPPSPSTPPPSPAPATDYSPPALQLTPVSPPEGYSPHNAASSSMTAAAGVIASAGAFMASSLV FTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10011158 [exp]	0	1
AT3G05620			Plant invertase/pectin methyle...		Lus10020677 [exp]	1.0	0.9852
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10043063 [exp]	1.4	0.9809
AT1G14730			Cytochrome b561/ferric reducta...		Lus10031935 [exp]	1.7	0.9786
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004600 [exp]	3.5	0.9728
AT5G22870			Late embryogenesis abundant (L...		Lus10021404 [exp]	3.5	0.9664
AT5G22870			Late embryogenesis abundant (L...		Lus10016161 [exp]	3.9	0.9685
AT5G48060			C2 calcium/lipid-binding plant...		Lus10037479 [exp]	4.4	0.9408
AT1G79480			Carbohydrate-binding X8 domain...		Lus10001764 [exp]	5.8	0.9429
AT3G05620			Plant invertase/pectin methyle...		Lus10029868 [exp]	5.9	0.9628
AT1G60360			RING/U-box superfamily protein...		Lus10028063 [exp]	6.0	0.9517

Compare expression of checked genes

Lus10011158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.