Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04910 1165 / 0 NSF N-ethylmaleimide sensitive factor, AAA-type ATPase family protein (.1) AT3G53230 164 / 6e-42 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 163 / 1e-41 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT5G03340 162 / 4e-41 ATPase, AAA-type, CDC48 protein (.1) AT3G56690 153 / 3e-38 CIP111 Cam interacting protein 111 (.1) AT1G05910 151 / 2e-37 cell division cycle protein 48-related / CDC48-related (.1) AT5G20000 140 / 8e-36 RPT6A AAA-type ATPase family protein (.1) AT5G19990 140 / 9e-36 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT1G53780 141 / 5e-35 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT1G53750 137 / 1e-34 RPT1A regulatory particle triple-A 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015440 [exp] 1436 / 0 AT4G04910 1200 / 0.0 N-ethylmaleimide sensitive factor, AAA-type ATPase family protein (.1) Lus10021441 [exp] 166 / 2e-42 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 165 / 3e-42 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 164 / 7e-42 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 163 / 1e-41 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 160 / 8e-41 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 153 / 2e-38 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 150 / 4e-38 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10025576 [exp] 152 / 8e-38 AT1G05910 1557 / 0.0 cell division cycle protein 48-related / CDC48-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G043900 [exp] 1244 / 0 AT4G04910 1196 / 0.0 N-ethylmaleimide sensitive factor, AAA-type ATPase family protein (.1) Potri.011G052800 [exp] 1225 / 0 AT4G04910 1179 / 0.0 N-ethylmaleimide sensitive factor, AAA-type ATPase family protein (.1) Potri.017G108200 [exp] 169 / 8e-44 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 169 / 2e-43 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 167 / 5e-43 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 167 / 8e-43 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 166 / 1e-42 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G030900 [exp] 151 / 2e-37 AT1G05910 1494 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Potri.007G127900 [exp] 150 / 3e-37 AT1G05910 1351 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Potri.006G035000 [exp] 147 / 3e-36 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0402 [flax] [poplar] Cdc48_2-like PF02933 [flax] [poplar] CDC48_2 Cell division protein 48 (CDC48), domain 2 CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10011177 pacid=23147134 polypeptide=Lus10011177 locus=Lus10011177.g ID=Lus10011177.BGIv1.0 annot-version=v1.0 ATGGCCGGCCGGTTCGGCTTCCAGTCATCTGCACCTGCGAAGATGAGAGTAACCAACACTCCTTCGTCGGATCTCGCCCTGACGAACCTCGCGTACTGCT CCGCCGCCGATCTCCACAACTTCGCCGTCCCTGGAACCAAGCTCTTCATGGCCTTGATCGCCGACCGAGTCGTTCTTACTCTCTCATATCCTTTTTTATT CAATGTCTTTTCCTTCTCTTTTTACATTCAGAGTGAGCAAATCGCACTGAATGCTGTTCAGCGTAGGCATATTCAAGTCTCGACTGGTGATGAAGTGTCC ATTAGCAGGTTCATCCCTCCTGAGGACTTCAACCTTGCATTGCTCACAGCTGAGCTGGAATTTGTGAAGAAGGGCGTGAATAGAACTGAACAGGTTGATG CTGTTGTTCTGTCCAATAAGCTCAAGAAAACATTCCTGAACCAGGTTATGACTTCAGGGCAAAGAGTTCCATTTGAGTATCATGGAACTAACTACATTTT TGTTGTCAATCAAGCTGTTGTGGAGGGCCAAGATAAATCTAGTGGTGTAGAGAGAGGGATGATAGCCGATGACACATACTTCATCTTTGAAGCATCAAAT GCCAGTGGAATAAAGATTGTAAATCAACGTGAAGCAGCCACTAGTAATATCTTCAAGCAAAAGGAATTCAATCTGCAGTCTCTGGGTATAGGTGGCTTGA GTGCTGAGTTTGCAGACATATTTCGAAGAGCTTTTGCATCTCGTGTTTTCCCATCTCATGTGTCAAGCAAGTTGGGGATTAAGCATGTGAAGGGTATGGT GCTGTTTGGACCTCCTGGAACTGGTAAAACTTTGATTGCTCGTCAGATAGGGAAAATGTTGAACGGAAAGGACCCGAAGATTGTTAATGGTCCTGAAGTC CTAAGCAAATTTGTTGGTGAAACTGAGAAGAACGTCAGAGATCTGTTTGCAGATGCTGAAAGTGATCAAAAGATGTATGGGGATCAGAGCGAATTGCATG TGATAATCTTTGATGAAATTGATGCTATATGCAAGTCCAGAGGATCAACTAGAGATGGTACAGGAGTTCATGACAGCATCGTAAATCAGTTACTTACAAA GATCGATGGTGTCGAGTCCCTGAACAATGTTTTGCTGATTGGAATGACTAATAGAAAGGATTTGCTCGACGAAGCACTTCTGAGACCAGGCCGGTTAGAG GTTCAAGTCGAGATAAGCCTTCCAGATGAAGATGGGCGTTTGCAGATTCTCGAAATCCATACAAACAAAATGAAAGAGAACTCTTTCCTTGATCGCAGTG TGAACCTTAAGGAGCTTGCTGCTCTTACGAAGAATTACAGCGGTGCAGAACTCGAAGGTGTTGTAAAAAGTGCTGTGTCTTATGCTTTGAATAGGCAATT GAGCCTCGACGATCTGACCAAGACAGTTGACGAAGAGAGTATCAAAGTCACCATGGACGATTTCTTACAAGCACTCCACGAAGTCGTACCTGCATTTGGA GTCTCCACTGACGACCTTGAGCGGTGCAGGCTTAACGGAATGGTCGACTGTGGGAAAGTTCATCAGCATGTCTATCAGAGAGCCATGCTGTTGGTGGAGC AAGTCAAAGTTAGTAACGGAAGTCCGCTCGTTACTTGTCTTCTTGAAGGCCGTGGCGGCAGTGGTAAAACTGCATTGGCAGCAACTGTGGGCATTGACAG TGGCTTCCCTTATGTCAAAATAATCTCAGCTGAAACTATGATCGGTCTACATGAGAGCACCAAGTGTGCGCATATCGTTAAGGCGTTTGAAGATGCTTAC AAGTCACCACTGAGCATTATAGTTCTGGATGACATCGAAAGATTGCTGGAGTATGTAGCGATCGGACCTCGTTTCTCTAACATAATTTTGCAAACCCTGC TGGTCCTGCTTAAGCGACTTCCTCCTAAGGGAAAGAAGCTTCTCGTGTTCGGAACAACCAGCGAAGTGGGATTCCTTGATTCGATCGGCTTCTGTGATGC TTTCTCCGTCACTTATCACCTTCCTACCCTCAAGACAGAAGATGCCAAGAAGGTACTGAGACAACTCAACGTCTTTGCACCAGAGGACATTGATGCAGCG GCCGAGGCTGTAAACGACATACCCATCAAGAAGCTGTACATGCTGATCGAAATGGCGGTACAAGGCGAGCACGGAGGGTCGTCGGAGGCAATCTACTCCG GTAAAGAGAAGATTAAGTACGCCCATTTCGTCGACTGTCTCCAGGACGTCATCCGATTCTAA
AA sequence Show only first row Show all	>Lus10011177 pacid=23147134 polypeptide=Lus10011177 locus=Lus10011177.g ID=Lus10011177.BGIv1.0 annot-version=v1.0 MAGRFGFQSSAPAKMRVTNTPSSDLALTNLAYCSAADLHNFAVPGTKLFMALIADRVVLTLSYPFLFNVFSFSFYIQSEQIALNAVQRRHIQVSTGDEVS ISRFIPPEDFNLALLTAELEFVKKGVNRTEQVDAVVLSNKLKKTFLNQVMTSGQRVPFEYHGTNYIFVVNQAVVEGQDKSSGVERGMIADDTYFIFEASN ASGIKIVNQREAATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPSHVSSKLGIKHVKGMVLFGPPGTGKTLIARQIGKMLNGKDPKIVNGPEV LSKFVGETEKNVRDLFADAESDQKMYGDQSELHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDLLDEALLRPGRLE VQVEISLPDEDGRLQILEIHTNKMKENSFLDRSVNLKELAALTKNYSGAELEGVVKSAVSYALNRQLSLDDLTKTVDEESIKVTMDDFLQALHEVVPAFG VSTDDLERCRLNGMVDCGKVHQHVYQRAMLLVEQVKVSNGSPLVTCLLEGRGGSGKTALAATVGIDSGFPYVKIISAETMIGLHESTKCAHIVKAFEDAY KSPLSIIVLDDIERLLEYVAIGPRFSNIILQTLLVLLKRLPPKGKKLLVFGTTSEVGFLDSIGFCDAFSVTYHLPTLKTEDAKKVLRQLNVFAPEDIDAA AEAVNDIPIKKLYMLIEMAVQGEHGGSSEAIYSGKEKIKYAHFVDCLQDVIRF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10011177 [exp]	0	1
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024912 [exp]	1.0	0.9431
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10017329 [exp]	2.0	0.9381
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10003873 [exp]	2.4	0.9191
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10033092 [exp]	3.0	0.9284
AT5G66760		SDH1-1	succinate dehydrogenase 1-1 (....		Lus10024015 [exp]	3.9	0.8908
AT2G27460			sec23/sec24 transport family p...		Lus10004866 [exp]	4.0	0.9089
AT4G23460			Adaptin family protein (.1)		Lus10024654 [exp]	4.0	0.9275
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10037101 [exp]	4.5	0.9196
AT4G23460			Adaptin family protein (.1)		Lus10032286 [exp]	4.6	0.9189
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024911 [exp]	6.3	0.8997

Compare expression of checked genes

Lus10011177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.