Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 358 / 2e-106 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 298 / 8e-84 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G50180 206 / 1e-54 NB-ARC domain-containing disease resistance protein (.1) AT3G46530 199 / 2e-52 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT3G46730 187 / 9e-49 NB-ARC domain-containing disease resistance protein (.1) AT3G50950 183 / 3e-47 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G46710 167 / 3e-42 NB-ARC domain-containing disease resistance protein (.1) AT3G07040 165 / 2e-41 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G58390 162 / 1e-40 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59780 161 / 4e-40 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042117 [exp] 502 / 5e-160 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 479 / 4e-150 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10028279 [exp] 450 / 2e-140 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 455 / 2e-139 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10006794 [exp] 355 / 2e-111 AT3G14470 264 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 361 / 7e-107 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 361 / 4e-106 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 352 / 2e-102 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 335 / 1e-96 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G271800 [exp] 597 / 0 AT3G14470 345 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Potri.006G273900 [exp] 565 / 0 AT3G14470 364 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Potri.006G272066 [exp] 563 / 0 AT3G14470 299 / 2e-85 NB-ARC domain-containing disease resistance protein (.1) Potri.006G275800 [exp] 541 / 7e-172 AT3G14470 345 / 3e-100 NB-ARC domain-containing disease resistance protein (.1) Potri.017G128000 [exp] 434 / 5e-134 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 429 / 3e-132 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127800 [exp] 413 / 3e-126 AT3G14470 437 / 1e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.017G136266 [exp] 411 / 9e-126 AT3G14470 412 / 2e-126 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127200 [exp] 404 / 1e-122 AT3G14470 404 / 4e-123 NB-ARC domain-containing disease resistance protein (.1) Potri.017G138100 [exp] 391 / 2e-118 AT3G14470 397 / 4e-121 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10011278 pacid=23149950 polypeptide=Lus10011278 locus=Lus10011278.g ID=Lus10011278.BGIv1.0 annot-version=v1.0 ATGGCTGAAATAATCCTCGTTCCAATTGCGAAAGAGATAGTGGGCAAGTTAACTGGCTTAGCTTTGAAAGAGATTGGCCTTTGGTGGACTCTGAAGACAG AGCTCAAGAGTTTAGAGGGAACAATGTCAACCATCAACGCTGTCCTCCTTGATGCTGAGGCAAAACAAAAACAAGACCATCAGATCAAAGATTGGCTGGG GAAGCTTTCTGAAGTGATGTACGATGCCGACGATTTACTTGATGATTTCGCAACTGAGGCTTCAAGGCAGGAGCAGCAACAGCAGTTTCCTGAAAAGTGT TCATGCTGCACTCTGGTATGCTGTTTAGTCTCTCTTCCTAAAAAGGTTTATAATGAGCTTAAGATGGCTCATAGTATCAAAGTAGTAAGGCAGAGGCTTG ATGATATAGCTGCGGATAGGGACAAATTGATGCTTGAACCAGATCGCAGTGACGGTCAATATGATGATGGTCAAAATGGTATTGATGAGAGGGAGACTAT CTCTTCTCCACCTTTCCTTGTCATTGGGAGGGAGAAAGACATGGATGAAGTTGTACCTCGTTTACTAAATCAAGAGAACAAAACCAGCATTTATGTCCTC CCCATTGTTGGGTTCGGTGGAATGGGAAAGACAACATTCGCTCAGCTTATATTCGAGGCTGACCAAATTAAAGCACATTTCGAGGTTAGAGCGTGGGTGT ATGTCTCCCAGACGTTTGACGTGAAGAAAGTTGTCAAGAACATTTTAGTATCTGTAAGTGGTGAAGAGATCCAAGTGAAGGATCCACAGCTGAATTTTCT GAAAGATTGCCTTCATAAAAGGATTGATGGTCGCAGGAGTCTGTTTGTTTTAGATGATGTGTGGGATGAGGATAGTGAAAAATGGAGGCTTTTGAGGCAA TGTTTGATGGTGGGAAATGTTAAAGTGGTAGTGACAACCCGCTCCCAAGGAGTAGCAAGGATAGCTGGCACCACGAAGCCACATAATTTACTTGGCATCT CAGTTGACGAGTCCTGGGATTTGATTTTGAAGATGGTGTTTGATGGGAAAGAACCAAGTAGCCAGCATGTGATCGACCTTGGCAAGGGCATCGCAAACAA GTGTGGAGGTATACCACTCGTAGTAAATTCTATCGGGAGCTTGTTACGTTTCAAGGATCCTGAAACGGAGTGGTCATCTTTCCTGGAAAATGAGCTCCCC ATCATACCAGAAGGAGACAAGTCTATAATGCCAACCCTTAGGTTGAGCTATGACTATCTTGCTCCAAAATTGAAGAATTGCTTTACTTACTGTAAGTTGT TTCCTAAAGGTCACGAGATTAAGGTGCAACCACTCATACAACTCTGGATGGCACAAGGATTCATTGGGCCAATAGATAAGAATAACAAGGCTATCTTGAA TCCTGAAGATTTGGGATTGCAGTATTTTGAGAAGCTATGGTGGGGTTCTTTCTTCCAAGAGGTTCAAAGGGATGAATTGGGGAACATAATAACTTGCAAA ATGCATGATCTGATACACGATTTAGCTACTTCCGTAGCAGAAGACAGGATTGTTGCCCTTGCTGATCTTGATGCCAGCTGTGATGATATCACATCAAGAA CTCGTCATGTGGCAATGAGAACAGTATATGAGGATCCTGATGATAATAAACACTCCAGCTCTGATGAGGAGGATCCCGATGGCCATAATCGGTTTAAATG GCCAAGTCTTGATCACCAGAAAGAAATCCCACAATCATTACTAGAAGCAAGCCAGTTGCGAACTCTCTTATTCATACCCACTATAGACGGGAAAGGGCTC ACACGAAGGCAATGTGAAGCAATGCTCCGCGGAATAAGACATGTAAGAGCGTTGGGATTATCACATATAGGACCATTAGAATCAATGTATGCATTCGCAG CTCTTATTACCCACGGGTTCAGTGGGTCGCAAAAGGAGCAGGCAGCATCTGAGGCTGCTTTTTCTAAGACGTGCTCATTCAACATCCAGCTACTGGATTT AATAGGCAAGTTGAAGCATCTACGGTATCTTGACTTCTCTTGCAACTTTGTTAATGAAATTGCAGATTCTGTAACATCTTTGGTAAATCTCCGAGTGCTT AACCTCTCCGGGTGTGTCAATCTCAATCGACTTCCTGGAAATATGGAGAAGCTAGTGAATTTGAGGCATCTTTACTGTGAGGGTTGTCAACTGACATATA TGCCCAAGGGGATCGGGAAACTGACTTCTCTTCAGACGTTAGACGTATTTGTGGTAGCGAATCCAAGTGAATTTGGAGATGACGTTGCTGCTGGACTAGG CGAGTTGAAAGAGTTAACAAGCTTGGGTGGAGAGCTGACAATTGAAGGCTTGCACCATCTGAAAAAGATTAGTCTTGATAAGCACTCCTCCAGATCATCA GTTGGCTATTTGAACGGTATGGAGCATCTTCAGTCTCTGAAGCTGAGTTGGAAGGCTTCTATTTCCGAGATTGATCATAATGATGATGATGATGCTAGAG TGGAAACCTGGCTGAAAAGACTTCGCCCACACGAAAATTTGAGACGGCTTACGATAGTTGGCTACACAGGATTGAAGTTACCGAGCTGGGTTTCCAAGGG CATGCCGAATTTGGTGGATTTTACATTGCAAGACTGCAAAACATGTGAGTACCTCCCGCCTCTACATCACAATCTGTCTCTCAAGAAACTGAAAGTCTCT GGCTGTGTAAACCTGAAAGGGTTCTGGAAGGACATGGACAGTAGTATCGCTGTTAGTTGTGATGATATTGATGAAGAGGAGGAGGATTCAGTTTCCAACA GCTTCCCTTGCCTTTCTTCATTGAAAATCAGCAACTGCCCACGGCTAACACGTATGCCTATGTTCCCTACTGTTGATGGTGCTCTGCTGTGGGAAGGCAC CAGCTCCGCTGCATTACTACGGACAATGAACATGCCAGGCTCCACTTGTAGTGGCGGAGGAACACCCATGTGCAAATTGAAGGAAATAGGTTTGGAAAAT GTTGGCGATCTTGAATTTCTGCCGGAAGAATGGCTGGCCAACCTCGTCTGCATTGAAGAAGTAACAGTTGTGAAATGTAGGAGGCTGCTGTCACTGCCAC CAGCGATGCGGCGGCTGACGTCTTTACGGAGCTTGAACATATACGAGTGTCCACAGTTGCAAGAAAGGTGTAAGAAAGATGAAGGTGCTGATTGGGATAA TATTAGTCACATCCCCAAAATTTCTTTCGGTTTCCAGAGCATCGGCCAGAAGGAGCCTGATTCTCCTTCTCCTTGCACTATTCTTTGA
AA sequence Show only first row Show all	>Lus10011278 pacid=23149950 polypeptide=Lus10011278 locus=Lus10011278.g ID=Lus10011278.BGIv1.0 annot-version=v1.0 MAEIILVPIAKEIVGKLTGLALKEIGLWWTLKTELKSLEGTMSTINAVLLDAEAKQKQDHQIKDWLGKLSEVMYDADDLLDDFATEASRQEQQQQFPEKC SCCTLVCCLVSLPKKVYNELKMAHSIKVVRQRLDDIAADRDKLMLEPDRSDGQYDDGQNGIDERETISSPPFLVIGREKDMDEVVPRLLNQENKTSIYVL PIVGFGGMGKTTFAQLIFEADQIKAHFEVRAWVYVSQTFDVKKVVKNILVSVSGEEIQVKDPQLNFLKDCLHKRIDGRRSLFVLDDVWDEDSEKWRLLRQ CLMVGNVKVVVTTRSQGVARIAGTTKPHNLLGISVDESWDLILKMVFDGKEPSSQHVIDLGKGIANKCGGIPLVVNSIGSLLRFKDPETEWSSFLENELP IIPEGDKSIMPTLRLSYDYLAPKLKNCFTYCKLFPKGHEIKVQPLIQLWMAQGFIGPIDKNNKAILNPEDLGLQYFEKLWWGSFFQEVQRDELGNIITCK MHDLIHDLATSVAEDRIVALADLDASCDDITSRTRHVAMRTVYEDPDDNKHSSSDEEDPDGHNRFKWPSLDHQKEIPQSLLEASQLRTLLFIPTIDGKGL TRRQCEAMLRGIRHVRALGLSHIGPLESMYAFAALITHGFSGSQKEQAASEAAFSKTCSFNIQLLDLIGKLKHLRYLDFSCNFVNEIADSVTSLVNLRVL NLSGCVNLNRLPGNMEKLVNLRHLYCEGCQLTYMPKGIGKLTSLQTLDVFVVANPSEFGDDVAAGLGELKELTSLGGELTIEGLHHLKKISLDKHSSRSS VGYLNGMEHLQSLKLSWKASISEIDHNDDDDARVETWLKRLRPHENLRRLTIVGYTGLKLPSWVSKGMPNLVDFTLQDCKTCEYLPPLHHNLSLKKLKVS GCVNLKGFWKDMDSSIAVSCDDIDEEEEDSVSNSFPCLSSLKISNCPRLTRMPMFPTVDGALLWEGTSSAALLRTMNMPGSTCSGGGTPMCKLKEIGLEN VGDLEFLPEEWLANLVCIEEVTVVKCRRLLSLPPAMRRLTSLRSLNIYECPQLQERCKKDEGADWDNISHIPKISFGFQSIGQKEPDSPSPCTIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14470			NB-ARC domain-containing disea...		Lus10011278 [exp]	0	1
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	4.1	0.9649
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10033867 [exp]	4.9	0.9637
					Lus10014873 [exp]	5.2	0.9591
AT1G68710			ATPase E1-E2 type family prote...		Lus10035068 [exp]	6.0	0.9554
AT2G14095			unknown protein		Lus10001299 [exp]	6.7	0.9475
AT3G47570			Leucine-rich repeat protein ki...		Lus10020140 [exp]	7.9	0.9520
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	11.0	0.9550
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	11.8	0.9551
AT1G79700	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041618 [exp]	12.2	0.9365
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	13.7	0.9533

Compare expression of checked genes

Lus10011278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.