Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17430 102 / 2e-23 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT1G51190 101 / 6e-23 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 99 / 4e-22 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 93 / 3e-20 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G37750 92 / 8e-20 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 91 / 2e-19 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT2G28550 79 / 1e-15 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) AT4G36920 77 / 6e-15 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) AT5G67180 74 / 3e-14 AP2_ERF TOE3 target of early activation tagged (EAT) 3 (.1) AT5G65510 67 / 6e-12 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040501 [exp] 278 / 2e-92 AT1G51190 120 / 4e-32 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Lus10031831 [exp] 101 / 6e-23 AT3G20840 580 / 0.0 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) Lus10037670 [exp] 97 / 5e-22 AT1G72570 355 / 1e-120 Integrase-type DNA-binding superfamily protein (.1) Lus10031260 [exp] 99 / 8e-22 AT1G51190 667 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Lus10018655 [exp] 93 / 5e-20 AT4G37750 430 / 9e-145 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10007719 [exp] 93 / 6e-20 AT4G37750 429 / 1e-144 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10008939 [exp] 91 / 2e-19 AT3G54320 303 / 2e-98 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10015653 [exp] 86 / 8e-19 AT1G72570 210 / 1e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10036719 [exp] 88 / 1e-18 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G018400 [exp] 103 / 8e-24 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.008G076400 [exp] 101 / 7e-23 AT5G17430 405 / 4e-133 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.003G205700 [exp] 101 / 8e-23 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.002G114800 [exp] 101 / 1e-22 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.010G181000 [exp] 101 / 1e-22 AT5G17430 399 / 2e-130 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.005G148400 [exp] 100 / 3e-22 AT4G37750 399 / 7e-132 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.003G064700 [exp] 99 / 7e-22 AT1G72570 350 / 1e-114 Integrase-type DNA-binding superfamily protein (.1) Potri.001G169500 [exp] 97 / 2e-21 AT1G72570 389 / 2e-131 Integrase-type DNA-binding superfamily protein (.1) Potri.014G012200 [exp] 95 / 1e-20 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.007G007400 [exp] 92 / 1e-19 AT4G37750 412 / 9e-137 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10011303 pacid=23149899 polypeptide=Lus10011303 locus=Lus10011303.g ID=Lus10011303.BGIv1.0 annot-version=v1.0 ATGAATGCTTATAACAGGAGTGTCGATCCACAGTTATATAGTTCTATTTGCGATGGTTCTATCTTCAATAGCTCTATCTTCAAGAAATCTATCTTTGATA AAACTGATGTGACGGAAATTAAAAATGTCAACTACCACGGAGTCACGAGATTTATCTATGTGACTAACACTGCTGATGTTGCCATGGCTGCTAGATTTCA TGACTTGCTTGCTCTCAAGATTTTTGGGACATCTACTGCCCTTAATTTTCCGGTAACAGGGTATGAAGAGGATCTGAAGCAAATGAAGAACATGTCCAAA CATGAATATATAAAGTCACTTAAGAAAAGGCCTGCAGATGGAAACCCTCACAATATATTGTGGGAGGTGAAACTTGAAAACTTCCCTCGACTTCCCCTTG GACAATTCGAGACTGAAAAAGAGGCCGCAAGGGCGTATGACATAGCTGCAATCAAGGTCAATGGAAGGAAGGCAACCACCAACTTTGGCATCCAACACTA CAACGTCAATCGGATCATCGACAGTACAAGTCTGCCTAGTGGTTCTAAAGGAGCGTACACAAACAGGGCAAACATTGTTCTTCTGCGCGAGTGCGTTGTA AACCGGGCTAATTCTCCAGCTGATTTCGCTGACGATCAGCCTCCAGCTCAGGATGCTGCCTCTCAGGCTGAACAGCCTGCTATTGCTACTCCTGACAATA TTGCAGCTGGGGAAGGAAGCTGTGGAGTCATGTCTATGAAAGATCGAAACTTTTCAGCAAATGGAGGAACCCCAGTTCTGGAACCAAGGCTTACCAGCAC TTCTCACCAAAGGGTTGCTAGGGTGATAGACTATAAAGAGGAACTGGAGATGATGAAGAACATGTCCAAAGATGAATATATAAAGTCACTCAAGAAGTTG ACTAGAGCAAACACTAGGCGTGTCTCCCAGTATCGAGGAGTAACCTTCAAAAGGCCTGCTGATGATAACCCTCAGAAGATCAAGTGGGAGGCGAAACTCG AAACAACAACAGACTTCCCTAGACTTTCCCTTGGAAAATTCGAGACTGAAAAAGAGGCCGCAAGGGCCTATGACATAGCTGCAATCAAGGTCAGCGGAAG AAAGGCAACCACCAACTTCGGCATCGAACAGTACCATGTCAATCAGATCATCGACGACACGAGTCTGACCGGGTACAAATACTGGGTGAACAAAGTTCTT CTGCGAAACTGCGTTATAAACCGGGCTAATTCTCCAGCCGATTTCGCTGATGATCAGCCTCAGGCTCGGGATGCTGTTGCTGCTCCTGACAATGCAGCGG GGGAAGGAAGCTCTGGAGCCATGTCTGTGTAA
AA sequence Show only first row Show all	>Lus10011303 pacid=23149899 polypeptide=Lus10011303 locus=Lus10011303.g ID=Lus10011303.BGIv1.0 annot-version=v1.0 MNAYNRSVDPQLYSSICDGSIFNSSIFKKSIFDKTDVTEIKNVNYHGVTRFIYVTNTADVAMAARFHDLLALKIFGTSTALNFPVTGYEEDLKQMKNMSK HEYIKSLKKRPADGNPHNILWEVKLENFPRLPLGQFETEKEAARAYDIAAIKVNGRKATTNFGIQHYNVNRIIDSTSLPSGSKGAYTNRANIVLLRECVV NRANSPADFADDQPPAQDAASQAEQPAIATPDNIAAGEGSCGVMSMKDRNFSANGGTPVLEPRLTSTSHQRVARVIDYKEELEMMKNMSKDEYIKSLKKL TRANTRRVSQYRGVTFKRPADDNPQKIKWEAKLETTTDFPRLSLGKFETEKEAARAYDIAAIKVSGRKATTNFGIEQYHVNQIIDDTSLTGYKYWVNKVL LRNCVINRANSPADFADDQPQARDAVAAPDNAAGEGSSGAMSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Lus10011303 [exp]	0	1
AT2G40410			Staphylococcal nuclease homolo...		Lus10041146 [exp]	4.5	0.8084
					Lus10000351 [exp]	7.3	0.7801
					Lus10002886 [exp]	9.0	0.7801
AT5G55690	MADS		MADS-box transcription factor ...		Lus10019819 [exp]	9.6	0.6645
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021543 [exp]	10.4	0.7801
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10023249 [exp]	11.6	0.7801
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10022204 [exp]	12.6	0.6940
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10041332 [exp]	12.7	0.7801
AT2G02850		ARPN	plantacyanin (.1)		Lus10028396 [exp]	13.7	0.7801
AT5G02930			F-box/RNI-like superfamily pro...		Lus10032255 [exp]	14.7	0.7801

Compare expression of checked genes

Lus10011303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.