Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67710 376 / 4e-127 GARP ARR11 response regulator 11 (.1) AT4G16110 281 / 1e-88 GARP ARR2 response regulator 2 (.1) AT3G16857 280 / 3e-88 GARP ARR1 response regulator 1 (.1.2) AT2G01760 268 / 6e-87 GARP ARR14 response regulator 14 (.1) AT2G25180 272 / 6e-86 GARP ARR12 response regulator 12 (.1) AT4G31920 240 / 5e-74 GARP ARR10 response regulator 10 (.1) AT5G58080 217 / 2e-64 GARP ARR18 response regulator 18 (.1) AT5G49240 167 / 5e-49 GARP APRR4 pseudo-response regulator 4 (.1) AT3G62670 121 / 5e-31 GARP ARR20, MEE41 maternal effect embryo arrest 41, response regulator 20 (.1) AT2G27070 114 / 2e-27 GARP ARR13 response regulator 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006446 [exp] 657 / 0 AT1G67710 377 / 9e-127 response regulator 11 (.1) Lus10016846 [exp] 302 / 3e-96 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10037719 [exp] 302 / 5e-96 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10005340 [exp] 268 / 1e-83 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10041020 [exp] 267 / 3e-83 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10019058 [exp] 249 / 2e-77 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10036303 [exp] 236 / 2e-72 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10025044 [exp] 177 / 8e-51 AT4G31920 220 / 6e-65 response regulator 10 (.1) Lus10027416 [exp] 149 / 1e-39 AT4G16110 169 / 4e-45 response regulator 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G181000 [exp] 442 / 5e-152 AT1G67710 383 / 5e-127 response regulator 11 (.1) Potri.010G053100 [exp] 432 / 2e-148 AT1G67710 380 / 2e-126 response regulator 11 (.1) Potri.008G213500 [exp] 303 / 7e-97 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.010G001000 [exp] 299 / 3e-95 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G135500 [exp] 289 / 2e-91 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G105600 [exp] 284 / 9e-90 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.006G188000 [exp] 270 / 3e-84 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.018G111300 [exp] 269 / 2e-83 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G262100 [exp] 255 / 2e-78 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.018G021300 [exp] 247 / 2e-75 AT2G25180 364 / 2e-117 response regulator 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10011389 pacid=23159267 polypeptide=Lus10011389 locus=Lus10011389.g ID=Lus10011389.BGIv1.0 annot-version=v1.0 ATGATGGAGAATAATGGCTTCTCTTCTCCAAGAACTGATGCTTTCCCAGCTGGGCTCCGAGTCCTGGTGGTGGATGACGATCCCACTTGGCTCAAAATCC TTGAGAAGATGCTCAGGAAATGCTCCTATGAAGTTACCACATGTGGTTTAGCAAGAGATGCTCTCAACAAGCTCCGTGAGAGAAAAGATGGATACGACAT AGTGATCAGCGATGTCAACATGCCAGACATGGATGGCTTTAAGCTTCTTGAACATGTCGGGCTCGAGATGGATCTTCCCGTGATCATGATGTCTGTTGAC GGAGAAACAAGTAGGGTGATGAAGGGAGTTCAACACGGAGCATGTGATTACCTCCTGAAGCCTATCAGGATGAAAGAGCTCAGGAACATATGGCAGCATG TCTTACGCAAGAGGATCCACGAGGTACGAGACATTGAAAGCTTCGATAATGGCGGCATCGAGAGCAGTACTATCCAAATGTCCGATGATGCACACTTGTT CTTCTGCGGAGGAGACGACTTTTCCTCGATGAAGAGGAGGAAAGATCACTACGACGACAATAACGATACCTCCTCCTCGTCTACTAAGAAAGCTAGAGTG GTTTGGTCTGTTGATCTTCACCAGAAGTTCGTCAAGGCTGTCAACCAAATAGGATATGACAAAGTTGGCCCTAAGAAAATCCTCGATCTGATGAACGTTC CATGGCTGACGAGGGAAAATGTTGCAAGCCATTTGCAGAAATACCGCCTCTACTTGAGCCGGCTGCAGAAGGATAGCAGTGATCAGAAGACATCCATTGG CAGTGCGAAGTATTCAGATTCACCTTCTAGCGATGCTGTTCTATTCAATGTCAACTATGGGATTCCGAGCAGTGCCTTGGTTGACCGAAAGACCGTCTCT TCAGCTACGGCTGGACAAAAACGAGCTTTAACCGTGGATATTCCTGATACACACATACCTACCAAGGCAGCAAGAACCGATCTTGGTCAAACTTTCGGTT CATCCCAAGCACCATACATGTGGGGTAATGATAATAATAATAATAACACAGACATTCAACTGAAACAAGAACAAAAGCCTCTGCATTTGGATAACGTGTT CAGGAAGCCACAACCAACGGAAGTTGATGAAATTCCTGCTACTACCTCTTCAGGCACACAACACCAGTGTGTGACTGTCGAAACCAGTGTGTGA
AA sequence Show only first row Show all	>Lus10011389 pacid=23159267 polypeptide=Lus10011389 locus=Lus10011389.g ID=Lus10011389.BGIv1.0 annot-version=v1.0 MMENNGFSSPRTDAFPAGLRVLVVDDDPTWLKILEKMLRKCSYEVTTCGLARDALNKLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVD GETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEVRDIESFDNGGIESSTIQMSDDAHLFFCGGDDFSSMKRRKDHYDDNNDTSSSSTKKARV VWSVDLHQKFVKAVNQIGYDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKDSSDQKTSIGSAKYSDSPSSDAVLFNVNYGIPSSALVDRKTVS SATAGQKRALTVDIPDTHIPTKAARTDLGQTFGSSQAPYMWGNDNNNNNTDIQLKQEQKPLHLDNVFRKPQPTEVDEIPATTSSGTQHQCVTVETSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Lus10011389 [exp]	0	1
AT1G14690		MAP65-7	microtubule-associated protein...		Lus10035098 [exp]	4.6	0.8377
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10014019 [exp]	5.7	0.8171
AT3G29130			unknown protein		Lus10023356 [exp]	8.8	0.8101
AT5G46030			unknown protein		Lus10015293 [exp]	10.9	0.8189
AT2G01520		ZCE1, MLP328	\(Zusammen-CA\)-enhanced 1, ML...		Lus10028887 [exp]	11.2	0.8188
AT5G39250			F-box family protein (.1)		Lus10032969 [exp]	12.2	0.8143
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10009571 [exp]	17.8	0.8132
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Lus10007191 [exp]	19.1	0.7925
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10038537 [exp]	19.5	0.7928
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10042419 [exp]	19.6	0.7916

Compare expression of checked genes

Lus10011389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.