Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24470 338 / 1e-116 ATKCR2, KCR2 beta-ketoacyl reductase 2 (.1) AT1G67730 290 / 2e-97 ATKCR1, YBR159, KCR1 beta-ketoacyl reductase 1 (.1) AT5G06060 72 / 3e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G10310 67 / 7e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G10050 68 / 8e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50690 67 / 1e-12 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 67 / 1e-12 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT3G03330 67 / 3e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47360 66 / 3e-12 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT3G55290 66 / 4e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006248 [exp] 306 / 8e-104 AT1G67730 451 / 1e-160 beta-ketoacyl reductase 1 (.1) Lus10036940 [exp] 306 / 1e-103 AT1G67730 449 / 4e-160 beta-ketoacyl reductase 1 (.1) Lus10006249 [exp] 202 / 3e-64 AT1G67730 212 / 2e-68 beta-ketoacyl reductase 1 (.1) Lus10015821 [exp] 85 / 4e-18 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 78 / 3e-16 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026851 [exp] 67 / 2e-12 AT3G03330 439 / 7e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026260 [exp] 66 / 3e-12 AT1G10310 382 / 4e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 67 / 4e-12 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 65 / 1e-11 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052500 [exp] 371 / 3e-129 AT1G24470 353 / 2e-122 beta-ketoacyl reductase 2 (.1) Potri.008G181600 [exp] 356 / 4e-123 AT1G24470 331 / 2e-113 beta-ketoacyl reductase 2 (.1) Potri.010G052300 [exp] 321 / 2e-109 AT1G67730 449 / 7e-160 beta-ketoacyl reductase 1 (.1) Potri.008G181700 [exp] 318 / 3e-108 AT1G67730 431 / 8e-153 beta-ketoacyl reductase 1 (.1) Potri.010G052400 [exp] 266 / 9e-88 AT1G67730 320 / 3e-109 beta-ketoacyl reductase 1 (.1) Potri.010G056100 [exp] 81 / 3e-17 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 79 / 1e-16 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G048800 [exp] 76 / 2e-15 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.009G103000 [exp] 75 / 1e-14 AT1G49670 943 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Potri.016G035200 [exp] 65 / 8e-12 AT3G55290 385 / 8e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10011396 pacid=23159188 polypeptide=Lus10011396 locus=Lus10011396.g ID=Lus10011396.BGIv1.0 annot-version=v1.0 ATGAACTTCTTTACAACTATCACTAATACTCAACCTCCATGGCTCCTTCTCCTAACCTCACTCGGATTCATCTCCCTCCTCCACCACCTCATCATCCCTC TCCTTACATACCTCTACCACAACTCCACATTCTTCATCTCACCAAAGAACCTCAAGACAAGGTACGGTCCATGGGCCGTGATAACCGGGCCAACAGACGG CATAGGTAAGGCCTTTGCCATCGAGCTGGCCAGACAAGGCATGAACCTGGTCCTGGTAGGAAGGAACCCTGACAAGCTGAAAAGGGTCTTGTGGGAGGTT GTGGTCCAGAACCCCATGATAGATATAAGGACCTTGGTGGTGGATTTTGCGACCACGCGAAACGTGGAGGAGGTGGTGAGAGACGGGATTCGCGGGTTGA ATGTCGGGGTTCTAATCAATAATGTTGGGATCACGTACCCTGAAGCTAGGTATTTCCATAAGGTGGAGGAGAAAGTGTGGATGGAGATTGTGAAGGTGAA CTTGAAAGGTACAACAATGGTGACAAGAGGTGTAATTGGAGGGATGATGGAGAGGAAGAAGGGAGCCATTGTTAATGTTGGTTCTGGTGCCGCTATTGTT GTCCCTTCTCATCCTCTCTACACCATCTATGCCGCCACTAAAGCGTACATCGATCAACTATCGAGATCCTTGAACGTGGAGTACAAACACTTGGGGATCG ACGTTCAATGTCAAGTGCCGCTATACGTAGCAACGGAAATGACCCGAAAAATCGCCATGATAGAGAAATCCTCGTTGTTTATACCGACTCCCAAAGAGTA CGTCGAGGCAGCAGTCCGTCAGATTGGCCATCAAGCTCGGTGCACGCCTTATTGGGCCCACTCCCTTCAGTGGTACTTTGCTAGATTGGTCCCCGAATCT CTCCTCGACTCGTGGCGTCTTTCCATTGGAACTCGAAGAATGAACCTTTGA
AA sequence Show only first row Show all	>Lus10011396 pacid=23159188 polypeptide=Lus10011396 locus=Lus10011396.g ID=Lus10011396.BGIv1.0 annot-version=v1.0 MNFFTTITNTQPPWLLLLTSLGFISLLHHLIIPLLTYLYHNSTFFISPKNLKTRYGPWAVITGPTDGIGKAFAIELARQGMNLVLVGRNPDKLKRVLWEV VVQNPMIDIRTLVVDFATTRNVEEVVRDGIRGLNVGVLINNVGITYPEARYFHKVEEKVWMEIVKVNLKGTTMVTRGVIGGMMERKKGAIVNVGSGAAIV VPSHPLYTIYAATKAYIDQLSRSLNVEYKHLGIDVQCQVPLYVATEMTRKIAMIEKSSLFIPTPKEYVEAAVRQIGHQARCTPYWAHSLQWYFARLVPES LLDSWRLSIGTRRMNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24470		ATKCR2, KCR2	beta-ketoacyl reductase 2 (.1)		Lus10011396 [exp]	0	1
AT5G27930			Protein phosphatase 2C family ...		Lus10015206 [exp]	2.4	0.7964
AT1G10470		IBC7, ATRR1, AR...	maternal effect embryo arrest ...		Lus10010723 [exp]	3.5	0.8128
AT2G27190		ATPAP12	ARABIDOPSIS THALIANA PURPLE AC...		Lus10006126 [exp]	8.5	0.7588
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10038882 [exp]	12.6	0.7908
AT1G05170			Galactosyltransferase family p...		Lus10015107 [exp]	18.4	0.7737
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10011875 [exp]	19.1	0.7722
AT5G43350		PHT1;1, ATPT1	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10021191 [exp]	25.6	0.7764
AT1G69340			appr-1-p processing enzyme fam...		Lus10030413 [exp]	28.0	0.7118
AT5G45290			RING/U-box superfamily protein...		Lus10030117 [exp]	31.5	0.6929
AT4G01580	B3		AP2/B3-like transcriptional fa...		Lus10008460 [exp]	31.6	0.6679

Compare expression of checked genes

Lus10011396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.